Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 2.5e-201 705.3 365 100.0
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 1.3e-154 550.1 363 77.1
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 1.5e-153 546.6 365 75.6
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 9.5e-153 543.9 365 74.0
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 1.0e-151 540.4 381 71.7
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 2.3e-151 539.3 363 75.2
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 1.5e-150 536.6 363 73.3
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 4.9e-149 531.6 365 74.2
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 2.7e-147 525.8 363 72.5
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 3.5e-147 525.4 363 73.3
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 7.8e-147 524.2 363 71.9
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 1.3e-146 523.5 364 71.7
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.3e-146 522.7 363 72.7
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 2.3e-146 522.7 363 71.1
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 5.0e-146 521.5 363 71.9
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 6.6e-146 521.2 363 69.1
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 8.6e-146 520.8 363 72.5
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 3.3e-145 518.8 363 73.3
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 3.3e-145 518.8 363 70.0
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 9.5e-145 517.3 363 70.0
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 3.1e-143 512.3 365 70.1
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 5.2e-143 511.5 363 69.7
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 5.2e-143 511.5 363 70.8
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 5.2e-143 511.5 363 70.8
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 8.9e-143 510.8 363 69.1
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 1.3e-141 506.9 363 70.8
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 8.3e-141 504.2 363 69.4
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.1e-140 503.8 365 71.0
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 2.4e-140 502.7 363 67.8
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 7.1e-140 501.1 367 69.5
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 1.6e-139 500.0 371 69.5
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 2.7e-139 499.2 363 70.8
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 2.7e-139 499.2 371 66.6
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 3.5e-139 498.8 377 67.1
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 4.6e-139 498.4 364 68.7
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 6.0e-139 498.0 340 74.4
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 6.0e-139 498.0 367 69.2
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.7e-138 496.5 338 73.4
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 3.9e-138 495.4 360 68.6
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 7.3e-137 491.1 364 69.5
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 1.2e-136 490.3 378 67.2
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 2.1e-136 489.6 363 66.1
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 4.7e-136 488.4 370 67.3
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 2.3e-135 486.1 362 67.7
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 3.1e-135 485.7 365 66.8
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 5.2e-135 485.0 359 68.8
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 4.4e-134 481.9 375 63.7
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 4.4e-134 481.9 363 66.9
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 4.1e-132 475.3 366 65.8
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 7.1e-132 474.6 363 65.0
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 7.1e-132 474.6 369 67.2
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 7.1e-132 474.6 369 66.9
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 1.2e-131 473.8 363 65.3
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 1.2e-131 473.8 364 65.9
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 2.1e-131 473.0 366 65.0
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 2.7e-131 472.6 366 66.9
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 2.7e-131 472.6 363 67.5
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 4.6e-131 471.9 363 64.2
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 6.0e-131 471.5 363 65.8
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 7.8e-131 471.1 363 63.6
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 1.0e-130 470.7 384 63.0
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 3.9e-130 468.8 365 64.9
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 6.6e-130 468.0 363 63.9
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 3.3e-129 465.7 363 65.3
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 2.8e-128 462.6 389 61.4
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 3.1e-127 459.1 363 64.2
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 5.2e-127 458.4 363 63.6
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 4.9e-125 451.8 426 58.5
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 1.4e-124 450.3 387 63.6
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 5.4e-124 448.4 363 63.9
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 2.7e-123 446.0 354 66.9
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 2.7e-123 446.0 355 65.4
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 3.5e-123 445.7 376 60.9
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 6.0e-123 444.9 363 62.0
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.5e-121 440.3 387 60.7
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 5.6e-121 438.3 363 69.4
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 1.2e-118 430.6 376 59.8
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 2.9e-117 426.0 363 62.3
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.7e-115 419.5 363 59.5
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 1.1e-113 414.1 238 87.4
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 5.6e-113 411.8 363 56.5
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 1.3e-112 410.6 332 62.3
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 2.0e-110 403.3 328 62.8
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 2.6e-110 402.9 349 62.8
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 3.8e-109 399.1 373 53.6
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 1.1e-103 380.9 363 55.1
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.4e-103 380.6 363 57.9
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.0e-101 374.4 363 55.6
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 2.2e-101 373.2 238 80.3
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 2.2e-101 373.2 238 79.4
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 7.9e-91 338.2 238 71.0
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 1.3e-90 337.4 238 71.0
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.5e-89 334.0 238 71.0
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 1.1e-87 327.8 238 70.2
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 1.4e-87 327.4 238 71.4
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 4.1e-87 325.9 364 46.2
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 1.7e-85 320.5 340 53.8
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 1.7e-85 320.5 364 46.7
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 2.3e-82 310.1 363 48.8
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 4.3e-81 305.8 292 58.2
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 1.9e-76 290.4 301 49.5
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 8.8e-74 281.6 307 51.1
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 2.0e-73 280.4 238 59.2
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 2.2e-61 240.4 262 49.6
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.2e-57 228.0 364 39.6
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 2.0e-54 217.2 126 80.2
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 6.5e-53 212.2 305 38.4
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 3.3e-44 183.3 134 68.7
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 2.2e-40 170.6 129 63.6
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 1.0e-37 161.8 369 32.2
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 4.3e-36 156.4 114 67.5
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 5.6e-36 156.0 371 32.6
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 2.1e-35 154.1 126 59.5
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 2.8e-35 153.7 342 30.7
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 4.7e-35 152.9 90 84.4
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 6.8e-34 149.1 127 60.6
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 2.0e-30 137.5 89 73.0
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 3.6e-27 126.7 99 63.6
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 8.1e-27 125.6 111 59.5
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.7e-24 117.9 105 57.1
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 4.1e-23 113.2 187 39.0
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.3e-13 81.6 53 66.0
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 1.2e-11 75.1 71 50.7
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 4.4e-09 66.6 121 36.4
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 5.8e-09 66.2 103 38.8
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 3.8e-08 63.5 116 35.3
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 8.4e-08 62.4 116 34.5
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 4.2e-07 60.1 116 35.3
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 1.2e-06 58.5 149 30.9
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 1.2e-06 58.5 109 34.9
Hund14611 Selenicereus undatus HOM05D002462 ORTHO05D002893 3.5e-06 57.0 128 32.0
EL10Ac4g09088 Beta vulgaris HOM05D001789 ORTHO05D001755 4.6e-06 56.6 150 32.0


User provided reference genes

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