Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G571400 Prunus persica HOM05D006894 ORTHO05D008724 1.9e-245 852.0 424 100.0
MD08G1235500 Malus domestica HOM05D006894 ORTHO05D008724 1.4e-208 729.6 429 85.5
FAN08G3638 Fragaria x ananassa HOM05D006894 ORTHO05D008724 9.5e-197 690.3 427 82.4
RcHm_v2.0_Chr7g0221781 Rosa chinensis HOM05D006894 ORTHO05D008724 2.6e-194 682.2 427 81.5
FAN18G4164 Fragaria x ananassa HOM05D006894 ORTHO05D008724 2.1e-180 636.0 464 73.7
Cfa005507 Carpinus fangiana HOM05D006894 ORTHO05D008724 1.3e-177 626.7 398 78.4
FvH4_5g29120 Fragaria vesca HOM05D006894 ORTHO05D008724 2.2e-177 625.9 427 77.8
CiPaw.05G048800 Carya illinoinensis HOM05D006894 ORTHO05D008724 2.9e-177 625.5 412 77.2
CANSAT11G1074 Cannabis sativa HOM05D006894 ORTHO05D008724 2.4e-176 622.5 418 75.4
QL02p099211 Quercus lobata HOM05D006894 ORTHO05D008724 9.3e-176 620.5 418 75.1
FAN04G0479 Fragaria x ananassa HOM05D006894 ORTHO05D008724 3.0e-174 615.5 427 76.3
Atru.chr6.599 Acer truncatum HOM05D006894 ORTHO05D008724 3.3e-173 612.1 397 76.8
Atru.chr6.614 Acer truncatum HOM05D006894 ORTHO05D008724 4.3e-173 611.7 397 76.3
Ciclev10001270m.g Citrus clementina HOM05D006894 ORTHO05D008724 9.6e-173 610.5 370 81.1
TAR628G1558 Trochodendron aralioides HOM05D006894 ORTHO05D008724 2.6e-170 602.4 419 73.3
Thecc.02G114400 Theobroma cacao HOM05D006894 ORTHO05D008724 3.4e-170 602.1 387 75.7
Gorai.005G242400 Gossypium raimondii HOM05D006894 ORTHO05D008724 7.6e-170 600.9 400 74.8
GSVIVG01022874001 Vitis vinifera HOM05D006894 ORTHO05D008724 1.7e-169 599.7 412 74.3
Gohir.D02G214600 Gossypium hirsutum HOM05D006894 ORTHO05D008724 2.9e-169 599.0 378 77.5
Gohir.A03G193500 Gossypium hirsutum HOM05D006894 ORTHO05D008724 3.8e-169 598.6 400 74.0
COL.COLO4_11781 Corchorus olitorius HOM05D006894 ORTHO05D008724 1.2e-167 593.6 414 71.5
Manes.07G017700 Manihot esculenta HOM05D006894 ORTHO05D008724 1.6e-167 593.2 406 73.4
Duzib248G0689 Durio zibethinus HOM05D006894 ORTHO05D008724 2.1e-167 592.8 386 75.6
VMungo0251G0921 Vigna mungo HOM05D006894 ORTHO05D008724 2.1e-167 592.8 402 74.1
Nn1g08851 Nelumbo nucifera HOM05D006894 ORTHO05D008724 3.5e-167 592.0 367 77.7
Phvul.002G249600 Phaseolus vulgaris HOM05D006894 ORTHO05D008724 3.5e-167 592.0 408 72.1
Glyma.05G168900 Glycine max HOM05D006894 ORTHO05D008724 1.8e-166 589.7 403 73.2
Psat7g062040 Pisum sativum HOM05D006894 ORTHO05D008724 8.7e-166 587.4 367 78.2
arahy.Tifrunner.gnm1.ann1.NZQI89 Arachis hypogaea HOM05D006894 ORTHO05D008724 1.1e-165 587.0 419 70.6
Medtr8g088790 Medicago truncatula HOM05D006894 ORTHO05D008724 1.6e-164 583.2 393 73.5
TPR.G23092 Trifolium pratense HOM05D006894 ORTHO05D008724 2.1e-164 582.8 385 74.8
TWI14G1412 Tripterygium wilfordii HOM05D006894 ORTHO05D008724 2.8e-164 582.4 361 76.2
PSO528G0189 Papaver somniferum HOM05D006894 ORTHO05D008724 1.4e-163 580.1 410 70.5
arahy.Tifrunner.gnm1.ann1.7VS6FJ Arachis hypogaea HOM05D006894 ORTHO05D008724 6.9e-163 577.8 371 75.5
Ca_17824_v3 Cicer arietinum L. HOM05D006894 ORTHO05D008724 4.5e-162 575.1 365 77.0
CsaV3_6G037480 Cucumis sativus L. HOM05D006894 ORTHO05D008724 1.7e-161 573.2 368 76.1
CAN.G798.8 Capsicum annuum HOM05D006894 ORTHO05D008724 3.8e-161 572.0 359 75.8
PSO170G1552 Papaver somniferum HOM05D006894 ORTHO05D008724 3.8e-161 572.0 363 76.9
AT1G60990 Arabidopsis thaliana HOM05D006894 ORTHO05D008724 1.2e-159 567.0 369 73.7
CARHR052050 Cardamine hirsuta HOM05D006894 ORTHO05D008724 2.1e-159 566.2 369 73.2
Aqoxy6G00238 Aquilegia oxysepala HOM05D006894 ORTHO05D008724 4.6e-159 565.1 369 73.7
AL2G15470 Arabidopsis lyrata HOM05D006894 ORTHO05D008724 4.6e-159 565.1 369 74.3
Lalb_Chr12g0204471 Lupinus albus HOM05D006894 ORTHO05D008724 6.0e-159 564.7 356 75.6
Eucgr.G00568 Eucalyptus grandis HOM05D006894 ORTHO05D008724 1.0e-158 563.9 368 73.6
Nitab4.5_0010336g0030 Nicotiana tabacum HOM05D006894 ORTHO05D008724 1.8e-158 563.1 357 75.6
Solyc01g104060.3 Solanum lycopersicum HOM05D006894 ORTHO05D008724 1.8e-158 563.1 359 74.1
Thhalv10023478m.g Eutrema salsugineum HOM05D006894 ORTHO05D008724 2.3e-158 562.8 369 73.2
Nitab4.5_0000816g0080 Nicotiana tabacum HOM05D006894 ORTHO05D008724 2.3e-158 562.8 359 74.4
Sopen01g046470 Solanum pennellii HOM05D006894 ORTHO05D008724 2.3e-158 562.8 359 74.1
Lj9A304G82 Lonicera japonica HOM05D006894 ORTHO05D008724 8.7e-158 560.8 369 73.4
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 2.5e-157 559.3 371 72.8
Sp2g03530 Schrenkiella parvula HOM05D006894 ORTHO05D008724 2.5e-157 559.3 369 72.6
A01p29780 Brassica napus HOM05D006894 ORTHO05D008724 4.3e-157 558.5 364 72.5
C01p37610 Brassica napus HOM05D006894 ORTHO05D008724 3.7e-156 555.4 364 72.5
BcaC09g49347 Brassica carinata HOM05D006894 ORTHO05D008724 4.8e-156 555.1 364 72.3
HanXRQChr09g0249011 Helianthus annuus HOM05D006894 ORTHO05D008724 1.4e-155 553.5 369 72.4
Carub.0002s0422 Capsella rubella HOM05D006894 ORTHO05D008724 6.9e-155 551.2 369 72.1
THA.LOC104809620 Tarenaya hassleriana HOM05D006894 ORTHO05D008724 1.2e-154 550.4 367 71.9
Migut.B00823 Erythranthe guttata HOM05D006894 ORTHO05D008724 1.7e-153 546.6 383 69.7
Aa31LG2G9600 Aethionema arabicum HOM05D006894 ORTHO05D008724 2.2e-153 546.2 398 67.8
Lj4g0002387 Lotus japonicus HOM05D006894 ORTHO05D008724 2.9e-153 545.8 346 76.9
Sed0001229 Sechium edule HOM05D006894 ORTHO05D008724 6.5e-153 544.7 352 76.4
vmacro01754 Vaccinium macrocarpon HOM05D006894 ORTHO05D008724 1.4e-152 543.5 411 67.4
Oeu027798.1 Olea europaea HOM05D006894 ORTHO05D008724 3.2e-152 542.3 357 73.7
CDE08G1218 Ceratophyllum demersum HOM05D006894 ORTHO05D008724 2.7e-151 539.3 386 69.2
Peaxi162Scf00017g02640 Petunia axillaris HOM05D006894 ORTHO05D008724 7.9e-151 537.7 343 74.3
Cc02_g22630 Coffea canephora HOM05D006894 ORTHO05D008724 4.3e-149 531.9 383 69.7
PGSC0003DMG400023767 Solanum tuberosum HOM05D006894 ORTHO05D008724 8.2e-148 527.7 376 68.9
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 2.4e-147 526.2 371 69.5
MSTRG.20303 Avicennia marina HOM05D006894 ORTHO05D008724 6.9e-147 524.6 379 68.6
DCAR_006702 Daucus carota HOM05D006894 ORTHO05D008724 6.9e-147 524.6 389 66.3
ECA240G3758 Erigeron canadensis HOM05D006894 ORTHO05D008724 1.2e-146 523.9 379 67.3
Peaxi162Scf00011g00531 Petunia axillaris HOM05D006894 ORTHO05D008724 3.4e-146 522.3 375 68.3
ATR0665G083 Amborella trichopoda HOM05D006894 ORTHO05D008724 5.5e-144 515.0 353 69.7
Sc15g0002580 Simmondsia chinensis HOM05D006894 ORTHO05D008724 6.1e-143 511.5 363 68.0
Actinidia39033 Actinidia chinensis HOM05D006894 ORTHO05D008724 1.5e-141 506.9 347 71.8
Rhsim11G0128300 Rhododendron simsii HOM05D006894 ORTHO05D008724 5.7e-141 505.0 384 67.4
MBI06_g01072_MAGBIO Magnolia biondii HOM05D006894 ORTHO05D008724 1.7e-140 503.4 501 54.1
BcaB04g20304 Brassica carinata HOM05D006894 ORTHO05D008724 6.9e-139 498.0 366 67.2
Dinv19376 Davidia involucrata HOM05D006894 ORTHO05D008724 4.4e-133 478.8 281 81.9
SEGI_07604 Sequoiadendron giganteum HOM05D006894 ORTHO05D008724 4.8e-132 475.3 389 59.1
FAN13G2283 Fragaria x ananassa HOM05D006894 ORTHO05D008724 6.3e-132 474.9 427 63.7
Actinidia30531 Actinidia chinensis HOM05D006894 ORTHO05D008724 7.0e-131 471.5 355 66.8
Haze_01731 Corylus avellana HOM05D006894 ORTHO05D008724 1.9e-120 436.8 434 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1590 Anthoceros agrestis HOM05D006894 ORTHO05D007218 5.5e-120 435.3 341 61.9
Mapoly0039s0108 Marchantia polymorpha HOM05D006894 ORTHO05D008724 9.4e-120 434.5 353 57.2
MELO3C014368.2 Cucumis melo HOM05D006894 ORTHO05D008724 1.4e-118 430.6 369 62.1
SMO119G0367 Selaginella moellendorffii HOM05D006894 ORTHO05D008724 2.7e-111 406.4 347 57.1
Pp3c9_20800 Physcomitrium patens HOM05D006894 ORTHO05D008724 4.4e-109 399.1 352 54.5
BraA01t03106Z Brassica rapa HOM05D006894 ORTHO05D008724 3.3e-104 382.9 234 76.1
BolC1t03726H Brassica oleracea HOM05D006894 ORTHO05D008724 7.2e-104 381.7 234 76.1
CSS0024184 Camellia sinensis var. sinensis HOM05D006894 ORTHO05D008724 2.3e-102 376.7 427 50.1
CBR_g30837 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-100 370.2 412 49.3
unitig_749.g14128 Utricularia gibba HOM05D006894 ORTHO05D008724 1.9e-91 340.5 286 59.8
SEGI_10844 Sequoiadendron giganteum HOM05D006894 ORTHO05D008724 1.1e-83 314.7 337 49.0
Cre12.g552850 Chlamydomonas reinhardtii HOM05D006894 ORTHO05D008724 4.9e-68 262.7 371 40.2
Rhsim09G0048600 Rhododendron simsii HOM05D006894 ORTHO05D008724 1.2e-63 248.1 393 42.5
Cpa.g.sc30.18 Carica papaya HOM05D006894 ORTHO05D008724 1.3e-47 194.9 123 74.8
ClCG09G014030 Citrullus lanatus HOM05D006894 ORTHO05D008724 6.2e-47 192.6 130 70.8
Rhsim09G0016000 Rhododendron simsii HOM05D006894 ORTHO05D008724 1.5e-45 188.0 188 53.7
BcaB01g03502 Brassica carinata HOM05D006894 ORTHO05D008724 1.9e-40 171.0 133 65.4
BcaB05g23073 Brassica carinata HOM05D006894 ORTHO05D008724 1.5e-37 161.4 108 70.4
ClCG09G014040 Citrullus lanatus HOM05D006894 ORTHO05D008724 1.2e-29 135.2 79 78.5
Cpa.g.sc30.19 Carica papaya HOM05D006894 ORTHO05D008724 2.2e-28 131.0 112 58.9
BcaB02g10691 Brassica carinata HOM05D000189 ORTHO05D000474 2.1e-26 124.4 125 52.8
Pp3c5_7230 Physcomitrium patens HOM05D006894 ORTHO05D008724 7.4e-24 115.9 168 39.9
PRCOL_00004673 Prasinoderma coloniale HOM05D006894 ORTHO05D008724 5.3e-22 109.8 375 26.7
Duzib052G1224 Durio zibethinus HOM05D006894 ORTHO05D008724 6.9e-22 109.4 66 77.3
Solyc09g015460.3 Solanum lycopersicum HOM05D006894 ORTHO05D008724 2.0e-21 107.8 60 78.3
Glyma.08G127500 Glycine max HOM05D006894 ORTHO05D008724 1.9e-19 101.3 99 54.5
ClCG09G014050 Citrullus lanatus HOM05D006894 ORTHO05D008724 9.4e-19 99.0 115 47.8
unitig_749.g14127 Utricularia gibba HOM05D006894 ORTHO05D008724 1.4e-17 95.1 77 63.6
CAN.G798.10 Capsicum annuum HOM05D006894 ORTHO05D008724 7.0e-14 82.8 175 34.3
Peaxi162Scf01350g00016 Petunia axillaris HOM05D006894 ORTHO05D008724 4.5e-13 80.1 52 73.1
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.7e-12 78.2 335 26.0
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.9e-12 77.4 335 24.5
Cpa.g.sc3656.1 Carica papaya HOM05D006894 ORTHO05D008724 1.5e-11 75.1 53 67.9
CDE06G1775 Ceratophyllum demersum HOM05D006894 ORTHO05D008724 9.4e-11 72.4 64 54.7
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.0e-09 67.4 333 24.3


User provided reference genes

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