Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 2.4e-219 765.4 446 100.0
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 4.7e-162 575.1 437 78.0
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 5.4e-158 561.6 437 74.8
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 2.5e-155 552.7 441 67.1
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 2.0e-144 516.5 376 71.8
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 4.9e-143 511.9 438 62.3
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.7e-140 503.4 438 63.7
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 2.3e-140 503.1 439 61.0
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.5e-139 500.4 546 55.1
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 1.6e-138 496.9 439 60.6
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 4.0e-137 492.3 437 58.8
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 2.6e-136 489.6 438 60.0
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 3.4e-136 489.2 437 66.1
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 8.3e-135 484.6 418 61.0
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 3.2e-134 482.6 437 65.9
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 9.2e-134 481.1 438 57.5
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.7e-133 479.6 426 61.5
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.0e-132 477.6 438 60.3
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 5.1e-132 475.3 438 58.7
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 5.1e-132 475.3 442 59.0
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.9e-131 473.4 445 56.9
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.5e-131 473.0 441 58.7
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.2e-130 470.7 433 61.9
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 2.1e-130 469.9 444 63.3
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.1e-129 466.1 437 60.0
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 6.8e-129 464.9 433 63.0
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 2.6e-128 463.0 481 53.2
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 1.3e-127 460.7 369 66.9
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 2.9e-127 459.5 377 67.1
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 8.4e-127 458.0 373 64.6
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 2.4e-126 456.4 437 62.7
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 6.0e-125 451.8 439 57.6
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 6.0e-125 451.8 442 54.5
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.1e-124 448.7 459 61.4
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 1.5e-123 447.2 437 61.8
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-121 440.7 464 59.5
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 5.8e-120 435.3 439 54.0
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 7.6e-120 434.9 433 58.7
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 9.9e-120 434.5 440 60.0
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 1.6e-117 427.2 438 54.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.7e-116 423.7 425 51.5
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 1.7e-116 423.7 438 50.0
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 3.0e-116 422.9 429 51.5
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 8.7e-116 421.4 437 53.1
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.3e-114 417.5 323 68.4
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.6e-114 417.2 437 57.4
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 3.6e-114 416.0 432 50.7
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 3.6e-114 416.0 438 51.1
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 4.8e-114 415.6 438 53.4
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 1.8e-113 413.7 438 58.0
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 2.0e-112 410.2 437 53.3
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 4.5e-112 409.1 444 48.9
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.3e-111 407.5 437 53.3
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.9e-111 406.4 439 52.8
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 3.8e-111 406.0 443 52.1
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 3.8e-111 406.0 438 57.3
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 1.9e-110 403.7 432 50.0
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 9.3e-110 401.4 438 49.1
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 9.3e-110 401.4 425 50.4
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.1e-109 400.2 425 50.6
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 3.5e-109 399.4 444 52.5
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 1.0e-108 397.9 354 61.0
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 1.1e-107 394.4 438 52.1
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 1.3e-106 391.0 435 50.6
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 1.6e-106 390.6 438 47.9
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 4.8e-106 389.0 447 48.1
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 4.8e-106 389.0 432 51.6
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.4e-105 387.5 432 51.4
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 3.1e-105 386.3 592 43.2
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 2.0e-104 383.6 439 51.0
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 7.6e-104 381.7 460 47.0
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 1.4e-102 377.5 437 48.5
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 1.9e-102 377.1 443 54.0
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 2.5e-102 376.7 445 48.3
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.2e-101 374.4 443 50.8
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 4.6e-101 372.5 432 48.6
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 6.0e-101 372.1 438 46.8
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 1.8e-100 370.5 438 48.2
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 3.0e-100 369.8 454 47.1
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 3.9e-100 369.4 454 46.9
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 3.9e-100 369.4 454 46.9
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 5.1e-100 369.0 439 54.2
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 6.7e-100 368.6 303 65.0
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.5e-99 367.5 496 43.3
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 4.3e-99 365.9 439 48.5
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 7.4e-99 365.2 435 50.8
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 8.2e-98 361.7 436 53.2
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 1.2e-96 357.8 348 62.4
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.2e-96 357.8 377 53.6
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 2.6e-96 356.7 445 48.8
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 3.4e-96 356.3 439 47.4
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.3e-95 354.4 445 46.3
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 3.8e-95 352.8 437 46.2
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 1.9e-94 350.5 442 47.3
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 4.6e-93 345.9 439 46.7
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 7.9e-93 345.1 463 43.2
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 1.3e-92 344.4 448 51.8
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 2.3e-92 343.6 374 50.5
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 4.8e-90 335.9 383 49.3
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.5e-87 325.1 377 49.3
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 7.2e-86 322.0 431 44.1
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 3.0e-84 316.6 456 41.9
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 5.1e-84 315.8 448 45.1
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.5e-83 314.3 424 49.1
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 1.8e-81 307.4 248 62.9
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.2e-80 304.7 428 42.5
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.2e-80 304.7 610 35.9
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 8.8e-76 288.5 325 50.5
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.1e-75 288.1 287 52.6
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 2.4e-73 280.4 427 43.8
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 1.5e-70 271.2 346 49.7
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 2.1e-69 267.3 363 43.0
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 8.0e-69 265.4 442 36.7
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 9.1e-65 251.9 461 35.6
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.3e-63 248.1 221 57.5
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.5e-62 244.6 437 39.6
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 5.5e-62 242.7 205 58.5
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.2e-61 241.5 279 45.9
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 4.0e-60 236.5 307 45.9
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 2.0e-59 234.2 229 55.5
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.3e-58 229.2 414 39.9
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 8.0e-53 212.2 378 35.2
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.0e-47 195.3 378 33.3
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.7e-47 194.5 228 51.3
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.5e-46 191.4 216 55.1
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.7e-45 186.4 425 34.4
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 5.2e-44 183.0 206 44.7
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 3.7e-42 176.8 340 34.7
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 6.6e-39 166.0 204 41.2
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 6.1e-37 159.5 354 33.1
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 1.0e-36 158.7 99 76.8
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-36 158.7 169 50.9
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.3e-34 151.8 173 49.7
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 2.4e-33 147.5 381 31.0
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 5.6e-30 136.3 250 32.8
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 6.2e-29 132.9 374 30.5
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 1.8e-28 131.3 199 43.2
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.3e-26 125.2 118 50.8
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.9e-25 121.3 101 56.4
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 2.5e-22 110.9 152 42.8
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.3e-22 110.5 73 65.8
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.6e-21 108.2 145 43.4
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 1.4e-20 105.1 82 67.1
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 6.8e-20 102.8 90 61.1
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 1.5e-19 101.7 74 73.0
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.0e-15 89.0 140 41.4
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 2.8e-13 80.9 206 25.7
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 2.9e-10 70.9 66 59.1
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 2.4e-09 67.8 371 22.6
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 5.4e-09 66.6 43 81.4
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 1.2e-08 65.5 126 33.3
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 1.0e-07 62.4 142 27.5
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 1.7e-07 61.6 102 37.3
SMO118G0303 Selaginella moellendorffii HOM05D044143 ORTHO05D050877 1.1e-06 58.9 200 28.0


User provided reference genes

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