Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 4.9e-58 227.6 120 100.0
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.8e-55 219.2 120 95.0
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 6.9e-52 207.2 120 90.0
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 4.6e-48 194.5 120 85.8
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.8e-47 192.6 121 86.8
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.8e-47 192.6 120 85.8
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.3e-47 192.2 121 85.1
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 3.0e-47 191.8 121 84.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.0e-47 191.8 121 83.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 6.7e-47 190.7 120 85.8
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.1e-46 189.9 120 83.3
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.5e-46 188.7 120 81.7
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.5e-46 188.7 120 81.7
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 7.4e-46 187.2 119 82.4
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.2e-45 185.7 120 80.8
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.8e-45 185.3 101 92.1
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 6.3e-45 184.1 100 92.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.3e-45 184.1 100 92.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.3e-45 184.1 100 92.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.3e-45 184.1 100 92.0
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 8.2e-45 183.7 119 80.7
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.1e-44 183.3 121 79.3
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.4e-44 183.0 119 82.4
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.4e-44 183.0 121 81.0
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.4e-44 183.0 115 82.6
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.8e-44 182.6 116 82.8
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 2.4e-44 182.2 100 91.0
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 4.1e-44 181.4 116 83.6
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 4.1e-44 181.4 118 81.4
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 5.3e-44 181.0 120 81.7
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 5.3e-44 181.0 120 81.7
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 5.3e-44 181.0 118 80.5
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 5.3e-44 181.0 119 82.4
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-43 179.1 119 80.7
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 2.6e-43 178.7 115 80.9
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.6e-43 178.7 122 77.9
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 5.9e-43 177.6 115 80.9
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 5.9e-43 177.6 115 81.7
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 5.9e-43 177.6 119 77.3
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 7.7e-43 177.2 126 76.2
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.3e-42 176.4 121 79.3
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.3e-42 176.4 110 80.9
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.7e-42 176.0 110 82.7
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 2.2e-42 175.6 117 79.5
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.8e-42 174.9 118 78.0
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.8e-42 174.9 118 78.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 5.0e-42 174.5 114 77.2
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 8.5e-42 173.7 119 77.3
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.1e-41 173.3 115 79.1
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.1e-41 173.3 117 76.9
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.1e-41 173.3 115 79.1
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.1e-41 173.3 120 75.0
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.4e-41 172.9 121 80.2
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.4e-41 172.9 119 79.0
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.9e-41 172.6 114 78.1
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.5e-41 172.2 119 77.3
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 2.5e-41 172.2 117 76.1
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 3.2e-41 171.8 121 75.2
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.2e-41 171.8 123 74.8
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 3.2e-41 171.8 123 74.8
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 3.2e-41 171.8 123 74.0
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 7.2e-41 170.6 122 74.6
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 9.4e-41 170.2 110 79.1
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 9.4e-41 170.2 123 74.8
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 9.4e-41 170.2 122 74.6
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 9.4e-41 170.2 122 74.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 9.4e-41 170.2 117 77.8
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.2e-40 169.9 121 75.2
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.6e-40 169.5 105 81.0
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.6e-40 169.5 123 74.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 2.7e-40 168.7 120 75.0
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 3.6e-40 168.3 118 72.9
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 4.7e-40 167.9 112 76.8
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 4.7e-40 167.9 124 73.4
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.7e-40 167.9 115 74.8
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 6.1e-40 167.5 122 73.8
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.0e-39 166.8 114 75.4
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-39 166.4 120 74.2
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.8e-39 166.0 111 76.6
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.8e-39 166.0 111 76.6
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.8e-39 166.0 116 73.3
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.8e-39 166.0 117 73.5
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 2.3e-39 165.6 121 74.4
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 3.9e-39 164.9 124 71.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 5.1e-39 164.5 117 73.5
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 6.7e-39 164.1 122 73.0
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 6.7e-39 164.1 121 73.6
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 6.7e-39 164.1 112 71.4
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 8.8e-39 163.7 98 81.6
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.5e-38 162.9 102 78.4
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-38 162.5 107 76.6
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.0e-38 162.5 112 73.2
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.6e-38 162.2 114 73.7
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 3.3e-38 161.8 103 77.7
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 4.4e-38 161.4 106 77.4
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 5.7e-38 161.0 117 71.8
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 7.4e-38 160.6 117 72.6
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 7.4e-38 160.6 117 72.6
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.2e-37 159.1 117 70.9
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.8e-37 158.7 110 73.6
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.8e-37 158.7 117 70.9
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.8e-37 158.7 117 70.9
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 3.7e-37 158.3 104 79.8
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 3.1e-36 155.2 117 71.8
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.1e-36 154.8 118 70.3
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.1e-36 154.8 85 90.6
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 9.1e-36 153.7 106 77.4
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.2e-35 153.3 118 70.3
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.0e-35 152.5 114 73.7
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 2.6e-35 152.1 119 68.9
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 7.7e-35 150.6 114 67.5
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.0e-34 150.2 118 68.6
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.8e-34 148.3 109 67.9
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 5.0e-34 147.9 117 65.8
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.5e-33 145.6 120 65.0
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 7.2e-33 144.1 117 67.5
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 9.4e-33 143.7 104 76.0
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.6e-32 142.9 111 67.6
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 4.7e-32 141.4 96 74.0
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 5.7e-30 134.4 107 67.3
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 3.1e-28 128.6 103 65.0
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 5.3e-28 127.9 102 66.7
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.9e-27 124.4 87 77.0
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.8e-26 121.7 84 75.0
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.7e-24 115.5 111 55.0
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.8e-23 112.8 67 83.6
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 4.0e-23 111.7 107 56.1
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-22 109.8 92 65.2
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.5e-22 109.8 92 65.2
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 5.7e-22 107.8 68 77.9
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 9.7e-22 107.1 69 78.3
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.3e-21 106.7 70 75.7
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 4.8e-21 104.8 71 76.1
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.8e-20 102.8 98 52.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 7.0e-20 100.9 64 71.9
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 9.4e-17 90.5 53 83.0
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.6e-16 89.7 116 51.7
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-16 89.4 74 66.2
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.7e-16 89.0 57 78.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-15 84.7 85 58.8
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 6.8e-15 84.3 73 64.4
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 4.4e-14 81.6 81 55.6
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.7e-14 81.3 68 67.6
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 7.5e-14 80.9 103 44.7
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 5.4e-12 74.7 60 61.7
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.6e-11 73.2 118 42.4
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.0e-10 70.5 53 66.0
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 1.3e-10 70.1 46 73.9
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-10 69.7 82 53.7
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 5.0e-10 68.2 48 72.9
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 5.0e-10 68.2 121 35.5
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.5e-09 66.6 41 75.6
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 5.5e-09 64.7 44 70.5
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.6e-08 63.2 37 78.4
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 4.7e-08 61.6 38 76.3
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 8.0e-08 60.8 74 48.6
RcHm_v2.0_Chr1g0327371 Rosa chinensis HOM05D001997 ORTHO05D005560 2.3e-07 59.3 37 75.7
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-06 57.0 38 76.3


User provided reference genes

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