Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 1.8e-34 148.7 75 100.0
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 4.4e-12 74.3 40 95.0
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 4.8e-11 70.9 43 81.4
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.8e-11 70.9 40 87.5
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.8e-11 70.9 40 87.5
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.8e-11 70.9 40 87.5
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.8e-11 70.9 40 87.5
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 4.8e-11 70.9 40 87.5
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.8e-11 70.9 40 87.5
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 6.3e-11 70.5 40 87.5
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 6.3e-11 70.5 40 87.5
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 6.3e-11 70.5 40 87.5
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 8.3e-11 70.1 40 87.5
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 8.3e-11 70.1 40 87.5
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.1e-10 69.7 40 85.0
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 1.1e-10 69.7 40 85.0
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 1.4e-10 69.3 40 87.5
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 1.8e-10 68.9 40 85.0
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.4e-10 68.6 40 85.0
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 4.1e-10 67.8 41 82.9
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 7.0e-10 67.0 40 80.0
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 7.0e-10 67.0 40 85.0
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 7.0e-10 67.0 40 85.0
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 9.1e-10 66.6 40 85.0
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.2e-09 66.2 40 85.0
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 1.6e-09 65.9 40 82.5
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.6e-09 65.9 40 82.5
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 2.0e-09 65.5 40 80.0
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 2.0e-09 65.5 40 85.0
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 2.0e-09 65.5 40 82.5
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 2.0e-09 65.5 40 85.0
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 2.0e-09 65.5 40 82.5
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 2.0e-09 65.5 41 80.5
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 2.0e-09 65.5 40 82.5
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 2.7e-09 65.1 40 80.0
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 2.7e-09 65.1 40 80.0
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 2.7e-09 65.1 40 80.0
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 2.7e-09 65.1 40 80.0
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 2.7e-09 65.1 40 80.0
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 2.7e-09 65.1 40 85.0
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 2.7e-09 65.1 40 80.0
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 3.5e-09 64.7 40 80.0
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 3.5e-09 64.7 40 85.0
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 4.5e-09 64.3 40 80.0
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 5.9e-09 63.9 40 75.0
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 5.9e-09 63.9 40 82.5
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 5.9e-09 63.9 39 82.1
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 5.9e-09 63.9 40 82.5
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 5.9e-09 63.9 40 80.0
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 5.9e-09 63.9 40 80.0
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 5.9e-09 63.9 40 82.5
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 7.7e-09 63.5 40 80.0
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 7.7e-09 63.5 40 82.5
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 7.7e-09 63.5 40 80.0
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 7.7e-09 63.5 40 77.5
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 7.7e-09 63.5 40 80.0
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 7.7e-09 63.5 39 82.1
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 7.7e-09 63.5 40 82.5
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 1.0e-08 63.2 40 80.0
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 1.0e-08 63.2 40 82.5
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 1.0e-08 63.2 41 75.6
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 1.0e-08 63.2 41 82.9
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 1.0e-08 63.2 39 82.1
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 1.3e-08 62.8 40 77.5
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 1.3e-08 62.8 40 77.5
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 1.3e-08 62.8 40 80.0
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 1.3e-08 62.8 40 80.0
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.3e-08 62.8 40 82.5
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.3e-08 62.8 40 82.5
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 1.3e-08 62.8 40 77.5
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 1.7e-08 62.4 40 75.0
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 1.7e-08 62.4 39 76.9
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 1.7e-08 62.4 40 82.5
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.7e-08 62.4 40 77.5
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.7e-08 62.4 40 77.5
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 1.7e-08 62.4 40 80.0
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 1.7e-08 62.4 40 80.0
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 2.2e-08 62.0 40 77.5
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 2.2e-08 62.0 40 80.0
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 2.2e-08 62.0 40 80.0
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 2.2e-08 62.0 40 75.0
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 2.9e-08 61.6 40 77.5
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 2.9e-08 61.6 40 77.5
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 3.8e-08 61.2 40 77.5
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 3.8e-08 61.2 40 77.5
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 3.8e-08 61.2 40 80.0
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 3.8e-08 61.2 40 77.5
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 3.8e-08 61.2 40 77.5
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 5.0e-08 60.8 37 81.1
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 5.0e-08 60.8 44 70.5
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 5.0e-08 60.8 40 80.0
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 5.0e-08 60.8 40 80.0
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 5.0e-08 60.8 40 75.0
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 5.0e-08 60.8 40 75.0
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 6.5e-08 60.5 40 75.0
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 6.5e-08 60.5 40 75.0
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 6.5e-08 60.5 40 75.0
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 6.5e-08 60.5 40 75.0
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 8.5e-08 60.1 40 77.5
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 8.5e-08 60.1 40 75.0
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 8.5e-08 60.1 40 75.0
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 8.5e-08 60.1 40 77.5
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 8.5e-08 60.1 40 77.5
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 8.5e-08 60.1 40 80.0
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 8.5e-08 60.1 40 75.0
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 8.5e-08 60.1 40 77.5
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 1.1e-07 59.7 53 62.3
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 1.5e-07 59.3 37 81.1
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 1.5e-07 59.3 37 81.1
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 1.5e-07 59.3 39 79.5
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 1.5e-07 59.3 38 78.9
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 1.5e-07 59.3 38 78.9
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.5e-07 59.3 40 77.5
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 1.5e-07 59.3 38 78.9
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 1.9e-07 58.9 40 72.5
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 2.5e-07 58.5 40 75.0
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 3.2e-07 58.2 39 76.9
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 4.2e-07 57.8 37 78.4
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 4.2e-07 57.8 39 76.9
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 7.2e-07 57.0 36 77.8
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 7.2e-07 57.0 36 77.8
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.2e-06 56.2 40 65.0
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 2.1e-06 55.5 35 77.1
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 2.1e-06 55.5 40 62.5
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 2.7e-06 55.1 40 67.5
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 6.1e-06 53.9 39 66.7


User provided reference genes

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