Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 3.9e-174 614.8 327 100.0
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 4.1e-123 445.3 318 81.8
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.1e-118 429.1 309 77.7
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 2.2e-116 422.9 321 74.5
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.9e-116 421.8 327 73.4
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 2.0e-114 416.4 318 76.7
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.9e-108 396.0 308 72.7
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 4.0e-102 375.6 307 70.0
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 6.8e-102 374.8 289 71.6
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 3.7e-100 369.0 312 71.2
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.2e-98 364.0 225 81.3
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 1.6e-98 363.6 299 68.2
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 1.7e-97 360.1 224 84.8
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 3.9e-97 359.0 223 85.7
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 6.6e-97 358.2 294 70.7
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 1.5e-96 357.1 287 70.7
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 3.3e-96 355.9 285 73.0
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 3.3e-96 355.9 228 82.9
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 3.3e-96 355.9 282 69.1
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.6e-95 353.6 321 67.3
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 2.1e-95 353.2 316 62.7
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 2.8e-95 352.8 280 72.5
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 2.8e-95 352.8 291 70.1
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 4.7e-95 352.1 223 82.1
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 8.1e-95 351.3 224 84.4
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.4e-94 350.5 311 62.1
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 8.9e-94 347.8 318 63.8
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 7.6e-93 344.7 291 68.4
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 6.4e-92 341.7 305 63.6
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 1.1e-91 340.9 318 61.9
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 1.1e-91 340.9 223 81.6
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.1e-91 340.9 277 67.5
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 4.2e-91 339.0 303 67.3
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 9.3e-91 337.8 319 61.4
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 9.3e-91 337.8 306 63.7
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 3.5e-90 335.9 221 78.3
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 4.6e-90 335.5 317 62.1
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 6.0e-90 335.1 299 66.6
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.0e-89 334.3 290 63.4
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.7e-89 333.6 225 76.9
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 1.7e-89 333.6 289 63.7
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 3.9e-89 332.4 332 59.0
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 5.1e-89 332.0 306 61.8
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 8.7e-89 331.3 321 60.1
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.1e-88 330.9 227 75.8
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.1e-88 330.9 227 75.8
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.1e-88 330.9 227 75.8
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 3.3e-88 329.3 312 62.8
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.3e-87 327.4 301 61.8
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 4.8e-87 325.5 230 74.8
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 4.8e-87 325.5 230 74.8
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 6.2e-87 325.1 231 74.9
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 6.2e-87 325.1 324 64.5
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 3.1e-86 322.8 305 61.6
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 4.0e-86 322.4 282 66.7
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 9.0e-86 321.2 323 59.8
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 5.8e-85 318.5 233 71.2
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.2e-84 316.6 226 73.0
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 4.9e-84 315.5 219 72.6
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 8.4e-84 314.7 225 73.8
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.1e-83 314.3 221 71.0
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.4e-83 313.2 298 63.4
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 3.2e-83 312.8 221 75.1
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 9.3e-83 311.2 219 70.8
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 9.3e-83 311.2 236 71.2
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 9.3e-83 311.2 271 68.6
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 2.1e-82 310.1 219 69.9
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 2.1e-82 310.1 219 69.9
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 2.1e-82 310.1 237 70.9
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 3.5e-82 309.3 219 71.7
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 3.5e-82 309.3 227 69.2
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 4.6e-82 308.9 231 69.7
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 4.6e-82 308.9 219 71.2
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 6.0e-82 308.5 219 70.3
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 7.8e-82 308.1 219 68.9
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.0e-81 307.8 221 69.2
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 1.7e-81 307.0 221 68.3
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 3.0e-81 306.2 220 71.4
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 8.7e-81 304.7 277 63.9
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.9e-80 303.5 243 67.1
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.3e-80 302.4 232 67.7
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.6e-80 302.0 227 67.8
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 5.6e-80 302.0 227 67.8
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 5.6e-80 302.0 230 68.7
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 9.6e-80 301.2 294 59.9
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 3.6e-79 299.3 221 68.8
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 6.9e-78 295.0 221 67.4
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 2.6e-77 293.1 293 56.7
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 5.8e-77 292.0 254 63.8
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 7.6e-77 291.6 220 68.2
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 2.2e-76 290.0 220 67.7
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 4.9e-76 288.9 172 82.6
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 8.4e-76 288.1 220 66.4
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 1.1e-75 287.7 219 67.6
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 1.1e-75 287.7 219 67.1
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 1.1e-75 287.7 219 67.6
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 1.1e-75 287.7 230 65.7
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 1.0e-73 281.2 442 44.1
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 5.1e-73 278.9 222 66.7
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 8.7e-73 278.1 288 56.6
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.1e-72 277.7 180 77.8
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 6.2e-71 271.9 235 63.8
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 8.1e-71 271.6 219 64.4
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 1.5e-69 267.3 227 62.6
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.7e-68 263.8 220 63.6
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 3.8e-68 262.7 283 59.4
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 8.4e-68 261.5 433 41.1
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 5.5e-67 258.8 307 54.1
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.3e-64 249.6 299 53.8
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 5.7e-64 248.8 267 52.1
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 9.6e-64 248.1 173 71.7
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 8.2e-63 245.0 195 62.6
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 6.1e-58 228.8 172 67.4
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.3e-57 227.6 165 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.5e-51 206.8 172 59.3
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.5e-51 206.8 108 96.3
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 4.3e-48 196.1 110 87.3
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.7e-47 194.1 109 87.2
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 3.7e-47 193.0 167 59.9
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.3e-44 184.5 109 82.6
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.4e-38 164.5 220 46.8
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 7.0e-38 162.2 91 85.7
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.6e-37 160.2 115 68.7
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 8.2e-31 138.7 165 53.3
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.4e-30 137.1 81 84.0
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 1.2e-29 134.8 145 55.9
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-29 134.8 81 82.7
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 3.5e-29 133.3 162 56.2
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 3.8e-28 129.8 165 51.5
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.1e-27 128.3 119 60.5
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-27 126.7 75 82.7
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-26 124.8 75 81.3
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.1e-26 124.0 75 82.7
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.1e-26 124.0 75 82.7
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.1e-26 122.5 150 46.7
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.1e-26 122.5 75 80.0
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 1.2e-24 118.2 134 50.7
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 3.4e-24 116.7 89 68.5
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 4.4e-24 116.3 136 44.1
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 6.5e-20 102.4 159 38.4
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 8.0e-18 95.5 136 42.6
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 2.8e-15 87.0 49 89.8
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 8.0e-10 68.9 152 35.5
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 7.5e-08 62.4 137 30.7
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 1.7e-07 61.2 161 32.3
CARHR054100 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.8e-06 57.8 70 45.7


User provided reference genes

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