Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G560800 Prunus persica HOM05D001183 ORTHO05D334381 8.8e-34 146.4 73 100.0
MD15G1416100 Malus domestica HOM05D001183 ORTHO05D004450 5.5e-28 127.1 69 89.9
Gorai.002G055400 Gossypium raimondii HOM05D001183 ORTHO05D004450 9.4e-28 126.3 69 88.4
Prupe.8G028300 Prunus persica HOM05D001183 ORTHO05D004450 9.4e-28 126.3 69 88.4
SGA_v2.0_scaffold24G10377 Striga asiatica HOM05D001183 ORTHO05D004450 1.2e-27 125.9 69 88.4
MSTRG.1359 Avicennia marina HOM05D001183 ORTHO05D004450 1.6e-27 125.6 69 88.4
RcHm_v2.0_Chr7g0225171 Rosa chinensis HOM05D001183 ORTHO05D004450 1.6e-27 125.6 69 88.4
Sc02g0004150 Simmondsia chinensis HOM05D001183 ORTHO05D004450 1.6e-27 125.6 69 87.0
VMungo0464G0662 Vigna mungo HOM05D001183 ORTHO05D004450 1.6e-27 125.6 69 85.5
Manes.18G091300 Manihot esculenta HOM05D001183 ORTHO05D004450 2.1e-27 125.2 69 87.0
COL.COLO4_25269 Corchorus olitorius HOM05D001183 ORTHO05D004450 2.7e-27 124.8 72 83.3
Oeu031094.1 Olea europaea HOM05D001183 ORTHO05D004450 2.7e-27 124.8 70 85.7
Ca_25986_v3 Cicer arietinum L. HOM05D001183 ORTHO05D004450 3.6e-27 124.4 69 87.0
Glyma.16G168000 Glycine max HOM05D001183 ORTHO05D004450 3.6e-27 124.4 69 87.0
MD10G1024400 Malus domestica HOM05D001183 ORTHO05D004450 3.6e-27 124.4 69 87.0
Thecc.08G147900 Theobroma cacao HOM05D001183 ORTHO05D004450 3.6e-27 124.4 69 87.0
VMungo0720G2935 Vigna mungo HOM05D001183 ORTHO05D004450 3.6e-27 124.4 69 88.4
ClCG08G003550 Citrullus lanatus HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
CsaV3_6G004010 Cucumis sativus L. HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
Dinv25853 Davidia involucrata HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
Duzib116G0191 Durio zibethinus HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
Gohir.A02G112704 Gossypium hirsutum HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
Gohir.D03G060608 Gossypium hirsutum HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
Manes.02G178700 Manihot esculenta HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
Sed0004314 Sechium edule HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
Sed0015350 Sechium edule HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
SGA_v2.0_scaffold48G17967 Striga asiatica HOM05D001183 ORTHO05D004450 4.7e-27 124.0 69 87.0
Duzib132G0522 Durio zibethinus HOM05D001183 ORTHO05D004450 6.1e-27 123.6 69 87.0
Glyma.20G166400 Glycine max HOM05D001183 ORTHO05D004450 6.1e-27 123.6 69 85.5
PGR042G1910 Punica granatum HOM05D001183 ORTHO05D004450 6.1e-27 123.6 69 85.5
QL11p018826 Quercus lobata HOM05D001183 ORTHO05D004450 6.1e-27 123.6 69 88.4
vmacro01799 Vaccinium macrocarpon HOM05D001183 ORTHO05D004450 6.1e-27 123.6 69 85.5
Actinidia10650 Actinidia chinensis HOM05D001183 ORTHO05D004450 8.0e-27 123.2 69 87.0
COL.COLO4_17919 Corchorus olitorius HOM05D001183 ORTHO05D004450 8.0e-27 123.2 69 87.0
Nn5g28717 Nelumbo nucifera HOM05D001183 ORTHO05D004450 8.0e-27 123.2 69 85.5
SMO197G0094 Selaginella moellendorffii HOM05D001183 ORTHO05D004450 8.0e-27 123.2 69 87.0
Duzib093G0412 Durio zibethinus HOM05D001183 ORTHO05D004450 1.0e-26 122.9 69 85.5
Migut.C01001 Erythranthe guttata HOM05D001183 ORTHO05D004450 1.0e-26 122.9 69 85.5
Psat1g099120 Pisum sativum HOM05D001183 ORTHO05D004450 1.0e-26 122.9 69 85.5
RcHm_v2.0_Chr7g0225311 Rosa chinensis HOM05D001183 ORTHO05D004450 1.0e-26 122.9 69 85.5
Thecc.02G043700 Theobroma cacao HOM05D001183 ORTHO05D004450 1.0e-26 122.9 69 87.0
TPR.G36681 Trifolium pratense HOM05D001183 ORTHO05D004450 1.0e-26 122.9 69 85.5
unitig_82.g27130 Utricularia gibba HOM05D001183 ORTHO05D004450 1.0e-26 122.9 69 85.5
HPP92_027451 Vanilla planifolia HOM05D001183 ORTHO05D004450 1.0e-26 122.9 69 84.1
arahy.Tifrunner.gnm1.ann1.EMU47I Arachis hypogaea HOM05D001183 ORTHO05D004450 1.4e-26 122.5 69 84.1
arahy.Tifrunner.gnm1.ann1.VIF38V Arachis hypogaea HOM05D001183 ORTHO05D004450 1.4e-26 122.5 69 84.1
CSS0041036 Camellia sinensis var. sinensis HOM05D001183 ORTHO05D004450 1.4e-26 122.5 69 85.5
CiPaw.16G013300 Carya illinoinensis HOM05D001183 ORTHO05D004450 1.4e-26 122.5 69 85.5
MD05G1023900 Malus domestica HOM05D001183 ORTHO05D004450 1.4e-26 122.5 69 85.5
Medtr6g035305 Medicago truncatula HOM05D001183 ORTHO05D004450 1.4e-26 122.5 69 85.5
QL11p018817 Quercus lobata HOM05D001183 ORTHO05D004450 1.4e-26 122.5 69 87.0
Rhsim11G0133300 Rhododendron simsii HOM05D001183 ORTHO05D004450 1.4e-26 122.5 69 85.5
SalBow7G0939 Salvia bowleyana HOM05D001183 ORTHO05D004450 1.4e-26 122.5 69 85.5
CANSAT25G2119 Cannabis sativa HOM05D001183 ORTHO05D004450 1.8e-26 122.1 69 85.5
Cfa018327 Carpinus fangiana HOM05D001183 ORTHO05D004450 1.8e-26 122.1 69 85.5
Lsat_1_v5_gn_6_99680 Lactuca sativa HOM05D001183 ORTHO05D004450 1.8e-26 122.1 70 84.3
Oeu023265.1 Olea europaea HOM05D001183 ORTHO05D004450 1.8e-26 122.1 67 88.1
Potri.002G069000 Populus trichocarpa HOM05D001183 ORTHO05D004450 1.8e-26 122.1 69 84.1
AL1G51790 Arabidopsis lyrata HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 84.1
AT1G43670 Arabidopsis thaliana HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 84.1
Carub.0001s3470 Capsella rubella HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 84.1
CARHR035610 Cardamine hirsuta HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 84.1
Cpa.g.sc21.192 Carica papaya HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 84.1
Lj2g0017022 Lotus japonicus HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 84.1
Mapoly0005s0291 Marchantia polymorpha HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 85.5
Phvul.004G095800 Phaseolus vulgaris HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 82.6
Phvul.007G079500 Phaseolus vulgaris HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 85.5
Potri.005G191400 Populus trichocarpa HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 84.1
Sabra05G0146200 Salix brachista HOM05D001183 ORTHO05D004450 2.3e-26 121.7 71 81.7
SMO145G0082 Selaginella moellendorffii HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 82.6
THA.LOC104806855 Tarenaya hassleriana HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 84.1
THA.LOC104809201 Tarenaya hassleriana HOM05D001183 ORTHO05D004450 2.3e-26 121.7 69 84.1
CAN.G268.9 Capsicum annuum HOM05D001183 ORTHO05D004450 3.0e-26 121.3 70 81.4
Phvul.004G128900 Phaseolus vulgaris HOM05D001183 ORTHO05D004450 3.0e-26 121.3 69 84.1
CAN.G89.14 Capsicum annuum HOM05D001183 ORTHO05D004450 4.0e-26 120.9 71 80.3
CiPaw.05G040500 Carya illinoinensis HOM05D001183 ORTHO05D004450 4.0e-26 120.9 69 85.5
Ciclev10001734m.g Citrus clementina HOM05D001183 ORTHO05D004450 4.0e-26 120.9 69 84.1
FvH4_2g13890 Fragaria vesca HOM05D001183 ORTHO05D004450 4.0e-26 120.9 69 84.1
FAN15G3264 Fragaria x ananassa HOM05D001183 ORTHO05D004450 4.0e-26 120.9 69 84.1
FAN20G0266 Fragaria x ananassa HOM05D001183 ORTHO05D004450 4.0e-26 120.9 69 84.1
FAN24G1572 Fragaria x ananassa HOM05D001183 ORTHO05D004450 4.0e-26 120.9 69 84.1
FAN27G0574 Fragaria x ananassa HOM05D001183 ORTHO05D004450 4.0e-26 120.9 69 84.1
Peaxi162Scf00765g00314 Petunia axillaris HOM05D001183 ORTHO05D004450 4.0e-26 120.9 71 80.3
Actinidia29524 Actinidia chinensis HOM05D001183 ORTHO05D004450 5.2e-26 120.6 69 84.1
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 5.2e-26 120.6 69 85.5
ATR0772G051 Amborella trichopoda HOM05D001183 ORTHO05D004450 5.2e-26 120.6 69 81.2
ECA246G1927 Erigeron canadensis HOM05D001183 ORTHO05D004450 5.2e-26 120.6 69 84.1
Gohir.A04G125800 Gossypium hirsutum HOM05D001183 ORTHO05D004450 5.2e-26 120.6 69 82.6
Gohir.D04G170800 Gossypium hirsutum HOM05D001183 ORTHO05D004450 5.2e-26 120.6 69 82.6
Gorai.012G159400 Gossypium raimondii HOM05D001183 ORTHO05D004450 5.2e-26 120.6 69 82.6
GSVIVG01034516001 Vitis vinifera HOM05D001183 ORTHO05D004450 5.2e-26 120.6 69 82.6
AUR62026716 Chenopodium quinoa HOM05D001183 ORTHO05D004450 6.8e-26 120.2 69 82.6
Eucgr.F02711 Eucalyptus grandis HOM05D001183 ORTHO05D004450 6.8e-26 120.2 69 82.6
Gohir.A02G065400 Gossypium hirsutum HOM05D001183 ORTHO05D004450 6.8e-26 120.2 69 82.6
Solyc04g071340.5 Solanum lycopersicum HOM05D001183 ORTHO05D004450 6.8e-26 120.2 70 80.0
Solyc12g056530.2 Solanum lycopersicum HOM05D001183 ORTHO05D004450 6.8e-26 120.2 69 82.6
Sopen12g029130 Solanum pennellii HOM05D001183 ORTHO05D004450 6.8e-26 120.2 69 82.6
PGSC0003DMG400010788 Solanum tuberosum HOM05D001183 ORTHO05D004450 6.8e-26 120.2 69 82.6
Atru.chr13.2152 Acer truncatum HOM05D001183 ORTHO05D004450 8.8e-26 119.8 69 82.6
arahy.Tifrunner.gnm1.ann1.TRC77F Arachis hypogaea HOM05D001183 ORTHO05D004450 8.8e-26 119.8 69 82.6
EL10Ac1g01534 Beta vulgaris HOM05D001183 ORTHO05D004450 8.8e-26 119.8 69 82.6
Cc10_g14740 Coffea canephora HOM05D001183 ORTHO05D004450 8.8e-26 119.8 69 84.1
Gohir.D02G071200 Gossypium hirsutum HOM05D001183 ORTHO05D004450 8.8e-26 119.8 69 82.6
Sopen04g027300 Solanum pennellii HOM05D001183 ORTHO05D004450 8.8e-26 119.8 69 81.2
PGSC0003DMG400024109 Solanum tuberosum HOM05D001183 ORTHO05D004450 8.8e-26 119.8 69 81.2
Haze_17747 Corylus avellana HOM05D001183 ORTHO05D004450 1.2e-25 119.4 67 85.1
Glyma.10G225400 Glycine max HOM05D001183 ORTHO05D004450 1.2e-25 119.4 69 81.2
Lj5g0015971 Lotus japonicus HOM05D001183 ORTHO05D004450 1.2e-25 119.4 69 82.6
Lalb_Chr03g0035261 Lupinus albus HOM05D001183 ORTHO05D004450 1.2e-25 119.4 69 82.6
TAR381G1652 Trochodendron aralioides HOM05D001183 ORTHO05D004450 1.2e-25 119.4 69 82.6
HanXRQChr05g0161541 Helianthus annuus HOM05D001183 ORTHO05D004450 1.5e-25 119.0 69 81.2
Lj4C695T4 Lonicera japonica HOM05D001183 ORTHO05D004450 1.5e-25 119.0 67 85.1
Glyma.08G182300 Glycine max HOM05D001183 ORTHO05D004450 2.0e-25 118.6 69 82.6
Gorai.005G080300 Gossypium raimondii HOM05D001183 ORTHO05D004450 2.0e-25 118.6 69 81.2
Pp3c13_1900 Physcomitrium patens HOM05D001183 ORTHO05D004450 2.0e-25 118.6 69 85.5
RcHm_v2.0_Chr6g0275641 Rosa chinensis HOM05D001183 ORTHO05D004450 2.0e-25 118.6 69 82.6
Zm00001eb348530 Zea mays HOM05D001183 ORTHO05D004450 2.0e-25 118.6 69 82.6
PSO210G3775 Papaver somniferum HOM05D001183 ORTHO05D004450 3.4e-25 117.9 69 81.2
PSO238G0026 Papaver somniferum HOM05D001183 ORTHO05D004450 3.4e-25 117.9 69 81.2
arahy.Tifrunner.gnm1.ann1.3T33KS Arachis hypogaea HOM05D000173 ORTHO05D004450 4.4e-25 117.5 69 79.7
arahy.Tifrunner.gnm1.ann1.TGU55E Arachis hypogaea HOM05D000173 ORTHO05D004450 4.4e-25 117.5 69 79.7
HanXRQChr10g0279051 Helianthus annuus HOM05D001183 ORTHO05D004450 4.4e-25 117.5 69 81.2
Pp3c3_1090 Physcomitrium patens HOM05D001183 ORTHO05D004450 4.4e-25 117.5 69 84.1
A08p06500 Brassica napus HOM05D001183 ORTHO05D004450 5.7e-25 117.1 70 80.0
C08p07540 Brassica napus HOM05D001183 ORTHO05D004450 5.7e-25 117.1 70 80.0
BolC8t47598H Brassica oleracea HOM05D001183 ORTHO05D004450 5.7e-25 117.1 70 80.0
BraA08t32661Z Brassica rapa HOM05D001183 ORTHO05D004450 5.7e-25 117.1 70 80.0
CDE02G3944 Ceratophyllum demersum HOM05D001183 ORTHO05D004450 5.7e-25 117.1 69 82.6
CDE08G0471 Ceratophyllum demersum HOM05D001183 ORTHO05D004450 5.7e-25 117.1 69 82.6
Dinv24244 Davidia involucrata HOM05D001183 ORTHO05D004450 5.7e-25 117.1 69 81.2
Sed0008644 Sechium edule HOM05D001183 ORTHO05D004450 5.7e-25 117.1 69 81.2
BcaB02g10523 Brassica carinata HOM05D001183 ORTHO05D004450 7.5e-25 116.7 69 81.2
BcaB04g17632 Brassica carinata HOM05D001183 ORTHO05D004450 7.5e-25 116.7 69 81.2
BcaC07g37316 Brassica carinata HOM05D001183 ORTHO05D004450 7.5e-25 116.7 69 81.2
A05p12530 Brassica napus HOM05D001183 ORTHO05D004450 7.5e-25 116.7 71 78.9
BraA05t20191Z Brassica rapa HOM05D001183 ORTHO05D004450 7.5e-25 116.7 71 78.9
MELO3C011682.2 Cucumis melo HOM05D001183 ORTHO05D004450 7.5e-25 116.7 77 77.9
Thhalv10011631m.g Eutrema salsugineum HOM05D001183 ORTHO05D004450 7.5e-25 116.7 69 81.2
Sp1g32670 Schrenkiella parvula HOM05D001183 ORTHO05D004450 7.5e-25 116.7 69 81.2
Hund15498 Selenicereus undatus HOM05D001183 ORTHO05D004450 7.5e-25 116.7 69 81.2
TWI59G0404 Tripterygium wilfordii HOM05D001183 ORTHO05D004450 7.5e-25 116.7 69 82.6
Nitab4.5_0008106g0030 Nicotiana tabacum HOM05D001183 ORTHO05D004450 9.8e-25 116.3 67 82.1
Nitab4.5_0017898g0010 Nicotiana tabacum HOM05D001183 ORTHO05D004450 9.8e-25 116.3 67 82.1
BolC4t23189H Brassica oleracea HOM05D001183 ORTHO05D004450 1.3e-24 115.9 70 78.6
Medtr2g008030 Medicago truncatula HOM05D001183 ORTHO05D004450 1.3e-24 115.9 69 78.3
BcaC02g11381 Brassica carinata HOM05D001183 ORTHO05D004450 1.7e-24 115.5 69 79.7
TAR625G1088 Trochodendron aralioides HOM05D001183 ORTHO05D004450 1.7e-24 115.5 69 79.7
VMungo0540G0089 Vigna mungo HOM05D001183 ORTHO05D004450 1.7e-24 115.5 69 82.6
Os01g0866400 Oryza sativa ssp. japonica HOM05D001183 ORTHO05D004450 2.2e-24 115.2 69 82.6
Zm00001eb146750 Zea mays HOM05D001183 ORTHO05D004450 2.2e-24 115.2 69 81.2
Lj9A316T45 Lonicera japonica HOM05D001183 ORTHO05D004450 2.8e-24 114.8 69 78.3
Ca_00106_v3 Cicer arietinum L. HOM05D001183 ORTHO05D004450 6.3e-24 113.6 69 78.3
Lj7C372T1 Lonicera japonica HOM05D001183 ORTHO05D004450 6.3e-24 113.6 67 82.1
Lj6g0017264 Lotus japonicus HOM05D001183 ORTHO05D004450 8.3e-24 113.2 69 78.3
Psat1g219000 Pisum sativum HOM05D001183 ORTHO05D004450 8.3e-24 113.2 69 75.4
RcHm_v2.0_Chr7g0225281 Rosa chinensis HOM05D001183 ORTHO05D004450 8.3e-24 113.2 68 80.9
Actinidia38959 Actinidia chinensis HOM05D001183 ORTHO05D004450 5.4e-23 110.5 69 75.4
TPR.G19745 Trifolium pratense HOM05D001183 ORTHO05D004450 5.4e-23 110.5 69 73.9
Aqoxy5G02105 Aquilegia oxysepala HOM05D001183 ORTHO05D004450 9.1e-23 109.8 69 75.4
DCAR_019086 Daucus carota HOM05D001183 ORTHO05D004450 4.5e-22 107.5 67 76.1
CSS0010930 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004450 2.9e-21 104.8 60 81.7
CSS0041919 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004450 2.9e-21 104.8 60 81.7
AUR62013573 Chenopodium quinoa HOM05D001183 ORTHO05D004450 5.0e-21 104.0 57 84.2
Hma1.2p1_0105F.1_g050790 Hydrangea macrophylla HOM05D001183 ORTHO05D004450 1.1e-20 102.8 71 74.6
Actinidia17797 Actinidia chinensis HOM05D001183 ORTHO05D004450 2.3e-18 95.1 57 80.7
Aa31LG6G9840 Aethionema arabicum HOM05D001183 ORTHO05D004450 2.3e-18 95.1 60 73.3
Nitab4.5_0000032g0010 Nicotiana tabacum HOM05D001183 ORTHO05D004450 1.5e-17 92.4 53 79.2
Nitab4.5_0005926g0020 Nicotiana tabacum HOM05D001183 ORTHO05D004450 1.5e-17 92.4 53 79.2
C04p16320 Brassica napus HOM05D001183 ORTHO05D000035 2.0e-17 92.0 54 77.8
arahy.Tifrunner.gnm1.ann1.I5JRZ8 Arachis hypogaea HOM05D001183 ORTHO05D004450 2.6e-17 91.7 53 79.2
SHI09386 Sapria himalayana HOM05D001183 ORTHO05D004450 3.4e-17 91.3 53 81.1
Peaxi162Scf01294g00123 Petunia axillaris HOM05D001183 ORTHO05D004450 7.5e-17 90.1 71 67.6
C04p16260 Brassica napus HOM05D001183 ORTHO05D004450 1.7e-16 89.0 53 79.2
QL02p024026 Quercus lobata HOM05D001183 ORTHO05D004450 2.2e-16 88.6 53 77.4
Lalb_Chr18g0060751 Lupinus albus HOM05D001183 ORTHO05D004450 3.5e-14 81.3 46 84.8
AagrBONN_evm.TU.Sc2ySwM_344.4605 Anthoceros agrestis HOM05D001183 ORTHO05D004450 9.5e-12 73.2 41 85.4
Lalb_Chr20g0123241 Lupinus albus HOM05D001183 ORTHO05D004450 9.5e-12 73.2 45 73.3
Actinidia04765 Actinidia chinensis HOM05D001183 ORTHO05D054740 1.0e-10 69.7 46 71.7
Haze_26260 Corylus avellana HOM05D001183 ORTHO05D004450 5.8e-09 63.9 59 50.8


User provided reference genes

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