Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G555000 Prunus persica HOM05D007776 ORTHO05D009812 7.4e-96 354.0 195 100.0
MD15G1406800 Malus domestica HOM05D007776 ORTHO05D009812 8.3e-47 191.0 143 73.4
RcHm_v2.0_Chr7g0227891 Rosa chinensis HOM05D007776 ORTHO05D009812 1.5e-40 170.2 136 72.1
FAN04G1877 Fragaria x ananassa HOM05D007776 ORTHO05D009812 4.6e-37 158.7 135 68.1
FAN08G2421 Fragaria x ananassa HOM05D007776 ORTHO05D009812 1.0e-36 157.5 137 65.7
FAN04G0521 Fragaria x ananassa HOM05D007776 ORTHO05D009812 1.3e-36 157.1 135 68.1
FvH4_5g31870 Fragaria vesca HOM05D007776 ORTHO05D009812 4.3e-35 152.1 135 65.2
FAN18G1270 Fragaria x ananassa HOM05D007776 ORTHO05D009812 1.4e-33 147.1 190 52.6
CANSAT25G0596 Cannabis sativa HOM05D007776 ORTHO05D009812 2.9e-31 139.4 135 57.8
Gohir.D05G288000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 2.5e-27 126.3 125 61.6
Gorai.009G303100 Gossypium raimondii HOM05D007776 ORTHO05D009812 2.5e-27 126.3 125 61.6
Potri.013G107300 Populus trichocarpa HOM05D007776 ORTHO05D009812 3.3e-27 125.9 134 56.7
Nn5g27525 Nelumbo nucifera HOM05D007776 ORTHO05D009812 4.3e-27 125.6 127 57.5
TWI14G0313 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 5.6e-27 125.2 127 59.1
Haze_21304 Corylus avellana HOM05D007776 ORTHO05D009812 1.3e-26 124.0 136 57.4
Manes.02G198100 Manihot esculenta HOM05D007776 ORTHO05D009812 4.8e-26 122.1 131 56.5
Ciclev10002690m.g Citrus clementina HOM05D007776 ORTHO05D009812 8.1e-26 121.3 125 55.2
MD08G1218400 Malus domestica HOM05D007776 ORTHO05D009812 8.1e-26 121.3 102 67.6
Gohir.A05G287000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 1.4e-25 120.6 125 59.2
CiPaw.07G236300 Carya illinoinensis HOM05D007776 ORTHO05D009812 4.0e-25 119.0 104 64.4
CiPaw.05G123100 Carya illinoinensis HOM05D007776 ORTHO05D009812 1.5e-24 117.1 107 62.6
Cfa012949 Carpinus fangiana HOM05D007776 ORTHO05D009812 2.6e-24 116.3 138 55.1
Sabra13G0092600 Salix brachista HOM05D007776 ORTHO05D009812 5.8e-24 115.2 131 55.0
TWI59G0674 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 7.6e-24 114.8 100 65.0
Potri.019G079800 Populus trichocarpa HOM05D007776 ORTHO05D009812 1.3e-23 114.0 136 52.9
Sed0008767 Sechium edule HOM05D007776 ORTHO05D009812 1.3e-23 114.0 120 52.5
Dinv41753 Davidia involucrata HOM05D000238 ORTHO05D002999 1.7e-23 113.6 122 55.7
PGR042G2621 Punica granatum HOM05D007776 ORTHO05D009812 2.9e-23 112.8 151 53.0
Sabra19G0091100 Salix brachista HOM05D007776 ORTHO05D009812 8.4e-23 111.3 136 52.2
Duzib177G0943 Durio zibethinus HOM05D007776 ORTHO05D009812 1.9e-22 110.2 123 53.7
VMungo1080G1686 Vigna mungo HOM05D007776 ORTHO05D009812 4.2e-22 109.0 112 54.5
AT1G35430 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 7.1e-22 108.2 101 61.4
THA.LOC104806792 Tarenaya hassleriana HOM05D007776 ORTHO05D009812 7.1e-22 108.2 150 48.0
Ca_14480_v3 Cicer arietinum L. HOM05D007776 ORTHO05D009812 1.2e-21 107.5 123 51.2
Aa31LG6G8730 Aethionema arabicum HOM05D007776 ORTHO05D009812 2.1e-21 106.7 131 51.9
AL1G50270 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 2.7e-21 106.3 101 59.4
CARHR034200 Cardamine hirsuta HOM05D007776 ORTHO05D009812 4.6e-21 105.5 100 61.0
Sp1g30150 Schrenkiella parvula HOM05D007776 ORTHO05D009812 4.6e-21 105.5 100 62.0
Psat5g210040 Pisum sativum HOM05D007776 ORTHO05D009812 7.9e-21 104.8 112 52.7
BcaC08g43737 Brassica carinata HOM05D007776 ORTHO05D009812 1.0e-20 104.4 104 60.6
BraA09t38716Z Brassica rapa HOM05D007776 ORTHO05D009812 1.0e-20 104.4 104 60.6
Carub.0001s3303 Capsella rubella HOM05D007776 ORTHO05D009812 1.0e-20 104.4 105 56.2
Medtr0045s0130 Medicago truncatula HOM05D007776 ORTHO05D009812 2.3e-20 103.2 124 46.0
A09p31800 Brassica napus HOM05D007776 ORTHO05D009812 3.0e-20 102.8 104 60.6
C06p11140 Brassica napus HOM05D007776 ORTHO05D009812 3.0e-20 102.8 104 59.6
BolC6t36249H Brassica oleracea HOM05D007776 ORTHO05D009812 3.0e-20 102.8 104 59.6
Duzib116G0238 Durio zibethinus HOM05D007776 ORTHO05D009812 5.1e-20 102.1 124 51.6
Phvul.005G023800 Phaseolus vulgaris HOM05D007776 ORTHO05D009812 6.7e-20 101.7 110 50.9
ClCG11G008540 Citrullus lanatus HOM05D007776 ORTHO05D009812 2.5e-19 99.8 113 51.3
QL02p026198 Quercus lobata HOM05D007776 ORTHO05D009812 2.5e-19 99.8 107 56.1
TPR.G27845 Trifolium pratense HOM05D000479 ORTHO05D009812 1.3e-18 97.4 112 50.0
Lalb_Chr25g0282901 Lupinus albus HOM05D007776 ORTHO05D009812 2.1e-18 96.7 116 49.1
Thecc.08G190700 Theobroma cacao HOM05D007776 ORTHO05D009812 6.2e-18 95.1 120 48.3
Cpa.g.sc507.3 Carica papaya HOM05D007776 ORTHO05D009812 8.1e-18 94.7 122 52.5
Thhalv10001838m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 4.0e-17 92.4 104 57.7
CSS0049282 Camellia sinensis var. sinensis HOM05D007776 ORTHO05D009812 3.4e-16 89.4 104 54.8
Lj3g0020626 Lotus japonicus HOM05D007776 ORTHO05D009812 7.6e-16 88.2 117 46.2
CARHR260240 Cardamine hirsuta HOM05D007776 ORTHO05D009812 1.3e-15 87.4 126 46.0
Thhalv10029064m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 1.3e-15 87.4 139 46.0
Solyc01g087860.2 Solanum lycopersicum HOM05D007776 ORTHO05D009812 1.7e-15 87.0 110 50.0
PGSC0003DMG400006837 Solanum tuberosum HOM05D007776 ORTHO05D009812 2.2e-15 86.7 110 48.2
TAR628G0395 Trochodendron aralioides HOM05D007776 ORTHO05D009812 4.9e-15 85.5 123 45.5
Sopen01g034790 Solanum pennellii HOM05D007776 ORTHO05D009812 8.4e-15 84.7 107 51.4
Migut.C01313 Erythranthe guttata HOM05D007776 ORTHO05D009812 7.1e-14 81.6 123 44.7
Sp6g08370 Schrenkiella parvula HOM05D007776 ORTHO05D009812 9.3e-14 81.3 137 41.6
BcaB01g02801 Brassica carinata HOM05D007776 ORTHO05D009812 1.6e-13 80.5 135 44.4
Glyma.15G276200 Glycine max HOM05D007776 ORTHO05D009812 1.6e-13 80.5 78 60.3
BcaC01g04727 Brassica carinata HOM05D007776 ORTHO05D009812 4.6e-13 79.0 132 45.5
Glyma.10G090400 Glycine max HOM05D007776 ORTHO05D009812 4.6e-13 79.0 100 51.0
Rhsim12G0006900 Rhododendron simsii HOM05D007776 ORTHO05D009812 1.0e-12 77.8 95 55.8
C03p34420 Brassica napus HOM05D007776 ORTHO05D009812 5.1e-12 75.5 132 44.7
BolC3t15751H Brassica oleracea HOM05D007776 ORTHO05D009812 5.1e-12 75.5 132 44.7
Ah.05g178510 Amaranthus hybridus HOM05D007776 ORTHO05D009812 6.7e-12 75.1 128 46.1
A03p28480 Brassica napus HOM05D007776 ORTHO05D009812 1.1e-11 74.3 135 43.7
BraA03t12053Z Brassica rapa HOM05D007776 ORTHO05D009812 1.1e-11 74.3 135 43.7
AL6G42920 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 1.9e-11 73.6 135 42.2
COL.COLO4_25869 Corchorus olitorius HOM05D007776 ORTHO05D009812 4.3e-11 72.4 44 68.2
ECA233G5618 Erigeron canadensis HOM05D007776 ORTHO05D009812 9.6e-11 71.2 80 46.2
Lsat_1_v5_gn_3_48301 Lactuca sativa HOM05D007776 ORTHO05D009812 9.6e-11 71.2 106 43.4
Lsat_1_v5_gn_8_157180 Lactuca sativa HOM05D007776 ORTHO05D009812 1.6e-10 70.5 45 71.1
HanXRQChr05g0130261 Helianthus annuus HOM05D007776 ORTHO05D009812 4.8e-10 68.9 126 38.9
Cc10_g10000 Coffea canephora HOM05D007776 ORTHO05D009812 9.0e-09 64.7 85 50.6
unitig_46.g17995 Utricularia gibba HOM05D007776 ORTHO05D009812 2.6e-08 63.2 96 40.6
Peaxi162Scf00076g00214 Petunia axillaris HOM05D007776 ORTHO05D009812 5.8e-08 62.0 73 47.9
AT4G09170 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 1.0e-07 61.2 134 39.6
EL10Ac1g00128 Beta vulgaris HOM05D007776 ORTHO05D009812 1.3e-07 60.8 139 40.3
unitig_747.g21557 Utricularia gibba HOM05D007776 ORTHO05D009812 2.2e-07 60.1 84 44.0
SalBow7G1484 Salvia bowleyana HOM05D007776 ORTHO05D009812 4.9e-07 58.9 89 44.9


User provided reference genes

Program Settings