Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 0.0e+00 1160.6 583 100.0
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 4.0e-270 934.5 595 82.5
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 4.4e-269 931.0 593 82.5
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.1e-247 857.1 612 75.3
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.5e-245 852.8 595 75.5
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 2.0e-245 852.4 595 76.1
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.2e-244 849.0 595 75.6
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.4e-244 847.4 595 75.6
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 1.1e-238 830.1 603 74.8
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 4.2e-235 818.1 614 72.0
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.1e-232 810.1 508 81.5
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 6.9e-230 800.8 598 72.2
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.5e-229 799.7 608 71.2
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 5.8e-229 797.7 616 69.2
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.3e-228 796.6 588 71.3
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 3.2e-227 792.0 573 74.9
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 3.2e-227 792.0 598 71.1
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 5.4e-227 791.2 591 71.6
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 6.0e-226 787.7 605 70.7
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 3.3e-224 781.9 603 69.2
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 7.4e-224 780.8 560 74.1
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.8e-221 771.2 614 69.7
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 4.9e-220 768.1 603 69.3
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 4.9e-220 768.1 599 70.6
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.9e-219 766.1 548 74.8
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-218 763.5 611 68.2
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 7.9e-218 760.8 625 66.9
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 2.3e-217 759.2 608 67.9
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 4.8e-215 751.5 420 88.8
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 6.2e-215 751.1 591 69.9
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.4e-214 750.0 590 69.7
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 5.0e-212 741.5 529 74.1
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 5.0e-212 741.5 590 68.6
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 8.4e-212 740.7 586 69.1
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.1e-211 740.3 596 68.1
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 7.2e-211 737.6 594 68.9
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.6e-210 736.5 530 73.6
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.6e-210 736.5 593 68.6
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 7.9e-210 734.2 602 66.4
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 7.9e-210 734.2 561 69.2
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 7.9e-210 734.2 593 68.1
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 1.8e-209 733.0 521 74.7
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 1.8e-209 733.0 598 67.1
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 3.0e-209 732.3 541 71.9
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 5.1e-209 731.5 597 66.3
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 1.5e-208 729.9 598 67.9
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.9e-208 729.6 630 64.9
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.3e-208 728.8 612 65.4
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 3.3e-208 728.8 547 69.3
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 5.7e-208 728.0 635 64.3
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 6.9e-206 721.1 564 67.6
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 9.0e-206 720.7 595 67.2
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-205 720.3 554 70.4
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 4.5e-205 718.4 603 65.5
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 1.3e-204 716.8 588 66.0
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.2e-204 716.1 444 81.3
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 2.9e-204 715.7 606 64.9
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 8.5e-204 714.1 596 66.6
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 1.9e-203 713.0 566 67.5
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 9.4e-203 710.7 445 80.7
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.3e-201 706.1 555 68.6
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 2.3e-201 706.1 596 66.4
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.3e-201 706.1 595 64.5
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 3.9e-201 705.3 444 80.4
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 2.5e-200 702.6 518 71.0
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.4e-200 701.0 597 65.3
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 7.4e-200 701.0 595 65.0
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 1.3e-199 700.3 595 65.4
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 9.1e-198 694.1 430 81.2
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 3.4e-197 692.2 597 64.7
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 7.7e-197 691.0 596 65.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.0e-196 690.6 506 71.9
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.0e-196 690.6 591 66.2
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 1.3e-196 690.3 503 71.8
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 2.9e-196 689.1 593 65.9
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 3.8e-196 688.7 485 73.0
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 5.0e-196 688.3 527 68.1
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 8.5e-196 687.6 594 64.1
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.4e-195 686.8 612 63.1
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 4.2e-195 685.3 604 63.7
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 2.1e-194 682.9 513 69.0
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 2.7e-194 682.6 598 63.5
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 6.1e-194 681.4 515 68.7
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 6.1e-194 681.4 593 63.9
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 7.9e-194 681.0 585 65.0
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 7.9e-194 681.0 626 62.0
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 3.9e-193 678.7 436 79.4
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.1e-192 677.2 604 63.9
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.6e-192 676.0 615 62.8
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.3e-192 675.6 596 62.8
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 7.4e-192 674.5 611 62.7
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 7.4e-192 674.5 602 62.5
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 1.3e-191 673.7 606 62.4
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-191 673.3 504 71.0
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.7e-191 673.3 504 70.8
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.7e-191 673.3 413 82.3
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.7e-191 673.3 544 67.5
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 2.8e-191 672.5 567 64.9
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.7e-191 672.2 422 80.1
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 3.7e-191 672.2 426 78.9
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.1e-190 670.6 410 82.4
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 1.8e-190 669.8 504 70.6
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.8e-190 669.8 593 62.2
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 4.1e-190 668.7 618 61.8
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 5.3e-190 668.3 507 70.8
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.5e-189 666.8 508 67.3
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.5e-189 666.8 610 62.3
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.6e-189 666.0 583 63.0
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 4.5e-189 665.2 504 70.2
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 4.5e-189 665.2 449 74.2
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 5.9e-189 664.8 527 67.7
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 8.5e-188 661.0 498 69.1
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 5.5e-187 658.3 582 63.2
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 5.5e-187 658.3 467 74.1
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.2e-186 657.1 599 62.8
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 1.0e-185 654.1 590 61.7
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 4.0e-185 652.1 410 79.8
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 8.8e-185 651.0 576 61.1
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.5e-184 650.2 603 61.0
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 1.5e-184 650.2 603 61.0
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 1.5e-184 650.2 601 62.1
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 2.2e-183 646.4 608 61.3
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 2.2e-183 646.4 608 61.3
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 2.2e-183 646.4 608 61.3
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.2e-183 646.4 408 78.9
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 3.7e-183 645.6 599 59.3
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 3.7e-183 645.6 604 61.1
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 2.7e-181 639.4 439 73.3
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.1e-179 634.0 497 66.4
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 9.4e-179 630.9 597 61.0
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 1.6e-178 630.2 615 59.5
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 1.0e-177 627.5 438 73.3
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 2.3e-177 626.3 538 62.8
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.3e-172 610.5 362 84.5
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.9e-164 582.8 422 69.4
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.8e-161 573.5 595 56.8
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 4.3e-147 525.8 357 72.0
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.6e-146 522.7 441 62.4
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 3.6e-146 522.7 430 64.2
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.7e-143 513.8 377 71.6
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.3e-140 504.2 427 61.8
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 2.2e-135 486.9 376 66.2
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.7e-132 477.2 325 70.8
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.8e-127 459.5 379 69.1
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.1e-99 368.2 209 83.7
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 4.5e-96 356.3 410 48.5
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 1.6e-93 347.8 197 83.8
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 1.1e-83 315.1 180 82.8
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 3.2e-78 297.0 223 72.2
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.3e-74 285.0 159 84.9
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.8e-74 283.9 156 86.5
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.8e-74 283.9 156 86.5
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 3.0e-68 263.8 447 40.5
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 2.7e-61 240.7 363 38.3
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 8.8e-60 235.7 209 63.2
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 1.4e-52 211.8 302 38.7
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 9.2e-49 199.1 148 71.6
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 6.1e-45 186.4 265 38.1
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 2.4e-41 174.5 109 78.9
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 5.9e-40 169.9 187 52.4
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 4.0e-36 157.1 110 68.2
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.3e-31 142.1 88 77.3
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 2.5e-30 137.9 83 75.9
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.3e-30 137.5 243 35.0
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 3.3e-30 137.5 99 72.7
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 4.3e-30 137.1 156 51.3
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 7.3e-30 136.3 128 58.6
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 3.1e-28 131.0 83 71.1
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 1.5e-22 112.1 236 39.0
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 3.6e-21 107.5 120 52.5
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 1.4e-17 95.5 101 56.4
TAR624G1033 Trochodendron aralioides HOM05D003880 ORTHO05D415972 2.3e-15 88.2 139 41.0
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 2.5e-14 84.7 175 35.4
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 5.6e-14 83.6 93 54.8
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 6.2e-13 80.1 111 44.1
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 2.6e-11 74.7 41 90.2
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 2.2e-10 71.6 60 65.0
Dinv20970 Davidia involucrata HOM05D064623 ORTHO05D179594 1.9e-06 58.5 70 44.3
Dinv21035 Davidia involucrata HOM05D064623 ORTHO05D181186 1.9e-06 58.5 70 44.3
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 2.5e-06 58.2 32 81.2


User provided reference genes

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