Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 3.8e-40 170.6 83 100.0
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 8.7e-29 132.9 83 75.9
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 1.1e-28 132.5 83 78.3
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 7.6e-25 119.8 83 72.3
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 1.7e-24 118.6 83 71.1
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.7e-24 118.6 83 71.1
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 6.4e-24 116.7 83 69.9
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 6.4e-24 116.7 83 71.1
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 5.4e-23 113.6 83 68.7
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 7.1e-23 113.2 83 63.9
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.2e-22 112.5 83 68.7
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 3.5e-22 110.9 82 69.5
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 1.6e-19 102.1 82 58.5
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 1.6e-19 102.1 83 56.6
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 2.1e-19 101.7 83 55.4
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 4.8e-19 100.5 82 58.5
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 3.1e-18 97.8 85 56.5
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 3.1e-18 97.8 79 60.8
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 9.0e-18 96.3 83 59.0
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 1.2e-17 95.9 81 56.8
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 1.2e-17 95.9 83 56.6
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 3.4e-17 94.4 84 54.8
MD15G1399800 Malus domestica HOM05D006694 ORTHO05D008240 3.4e-17 94.4 57 80.7
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 3.4e-17 94.4 83 55.4
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 4.5e-17 94.0 83 51.8
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 4.5e-17 94.0 84 54.8
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 4.5e-17 94.0 76 57.9
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 1.3e-16 92.4 83 54.2
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 1.3e-16 92.4 83 50.6
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 4.9e-16 90.5 78 51.3
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 8.4e-16 89.7 83 50.6
Dinv15034 Davidia involucrata HOM05D006694 ORTHO05D008240 8.4e-16 89.7 57 73.7
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 8.4e-16 89.7 83 49.4
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 1.4e-15 89.0 83 47.0
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 2.4e-15 88.2 57 70.2
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 2.4e-15 88.2 80 56.2
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 4.2e-15 87.4 82 50.0
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 5.5e-15 87.0 84 54.8
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 9.3e-15 86.3 57 68.4
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 1.6e-14 85.5 82 46.3
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 4.6e-14 84.0 83 45.8
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 6.0e-14 83.6 82 47.6
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 6.0e-14 83.6 79 53.2
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 7.9e-14 83.2 82 46.3
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 1.0e-13 82.8 82 51.2
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 1.0e-13 82.8 79 53.2
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 1.3e-13 82.4 79 57.0
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.3e-13 82.4 82 50.0
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.0e-13 81.3 83 49.4
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.0e-13 81.3 83 49.4
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 3.0e-13 81.3 82 48.8
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 3.0e-13 81.3 82 46.3
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 3.0e-13 81.3 82 50.0
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 3.9e-13 80.9 82 47.6
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 5.1e-13 80.5 83 48.2
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 6.7e-13 80.1 68 52.9
Aa31LG6G11680 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.7e-13 79.7 77 50.6
Aa31LG6G5340 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.7e-13 79.7 77 50.6
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.1e-12 79.3 79 50.6
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.1e-12 79.3 82 46.3
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.5e-12 79.0 83 49.4
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.9e-12 78.6 77 49.4
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.9e-12 78.6 83 45.8
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.9e-12 78.6 83 45.8
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.5e-12 78.2 79 50.6
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.5e-12 78.2 79 50.6
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 2.5e-12 78.2 85 49.4
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.3e-12 77.8 82 50.0
Eucgr.G03208 Eucalyptus grandis HOM05D006694 ORTHO05D008240 5.6e-12 77.0 82 50.0
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 5.6e-12 77.0 84 47.6
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 7.4e-12 76.6 83 44.6
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 9.6e-12 76.3 49 73.5
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 9.6e-12 76.3 83 44.6
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 1.3e-11 75.9 82 46.3
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 1.3e-11 75.9 82 46.3
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 1.6e-11 75.5 59 61.0
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.2e-11 73.6 69 56.5
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.1e-10 72.8 73 47.9
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 3.1e-10 71.2 80 50.0
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 3.1e-10 71.2 56 58.9
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 4.0e-10 70.9 80 48.8
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 4.0e-10 70.9 80 47.5
Rhsim13G0208900 Rhododendron simsii HOM05D006694 ORTHO05D008240 5.3e-10 70.5 54 55.6
DCAR_024407 Daucus carota HOM05D006694 ORTHO05D008240 9.0e-10 69.7 83 39.8
ECA238G0309 Erigeron canadensis HOM05D006295 ORTHO05D008061 1.2e-09 69.3 82 41.5
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 1.5e-09 68.9 80 46.2
ATR0737G136 Amborella trichopoda HOM05D006694 ORTHO05D008240 3.4e-09 67.8 83 38.6
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 3.4e-09 67.8 74 44.6
Aa31LG10G10300 Aethionema arabicum HOM05D006694 ORTHO05D008240 7.6e-09 66.6 83 44.6
Manes.01G178400 Manihot esculenta HOM05D006694 ORTHO05D008240 7.6e-09 66.6 57 50.9
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.0e-08 66.2 79 46.8
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.0e-08 66.2 79 46.8
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 1.0e-08 66.2 66 51.5
MSTRG.18464 Avicennia marina HOM05D006694 ORTHO05D008240 3.8e-08 64.3 56 50.0
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 4.9e-08 63.9 57 56.1
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 8.4e-08 63.2 63 52.4
GSVIVG01037290001 Vitis vinifera HOM05D006694 ORTHO05D008240 8.4e-08 63.2 47 59.6
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 2.5e-07 61.6 79 38.0
ATR0681G086 Amborella trichopoda HOM05D006694 ORTHO05D008240 7.1e-07 60.1 79 38.0
HPP92_025503 Vanilla planifolia HOM05D062792 ORTHO05D008240 1.6e-06 58.9 80 32.5
HPP92_025533 Vanilla planifolia HOM05D062792 ORTHO05D008240 1.6e-06 58.9 80 32.5
Medtr6g072030 Medicago truncatula HOM05D027749 ORTHO05D048960 2.1e-06 58.5 61 42.6
Potri.009G069600 Populus trichocarpa HOM05D006694 ORTHO05D008240 2.7e-06 58.2 53 50.9
ATR1128G092 Amborella trichopoda HOM05D006694 ORTHO05D008240 7.9e-06 56.6 83 34.9
Sabra09G0052500 Salix brachista HOM05D006694 ORTHO05D008240 7.9e-06 56.6 49 53.1


User provided reference genes

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