Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 1.1e-56 223.0 113 100.0
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 4.2e-43 177.9 120 79.2
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 1.3e-36 156.4 120 71.7
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 4.7e-34 147.9 117 70.1
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 4.0e-33 144.8 117 67.5
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 6.8e-33 144.1 109 68.8
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 6.8e-33 144.1 109 68.8
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 9.8e-32 140.2 74 95.9
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 2.3e-28 129.0 71 90.1
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 5.2e-25 117.9 115 59.1
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 4.4e-24 114.8 105 58.1
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 9.8e-24 113.6 105 58.1
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 9.8e-24 113.6 117 54.7
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 9.8e-24 113.6 99 61.6
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 9.8e-24 113.6 107 58.9
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 1.3e-23 113.2 114 54.4
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 2.2e-23 112.5 99 60.6
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 3.7e-23 111.7 105 61.0
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 4.9e-23 111.3 109 57.8
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 4.9e-23 111.3 109 56.9
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 6.4e-23 110.9 109 56.9
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 8.3e-23 110.5 104 56.7
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 1.1e-22 110.2 105 57.1
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 1.1e-22 110.2 109 56.0
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.1e-22 110.2 109 55.0
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 1.1e-22 110.2 105 57.1
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 1.1e-22 110.2 105 57.1
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 1.8e-22 109.4 109 56.0
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 1.8e-22 109.4 120 55.8
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 2.4e-22 109.0 112 56.2
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 2.4e-22 109.0 109 55.0
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 3.2e-22 108.6 109 56.0
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 3.2e-22 108.6 109 56.0
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 3.2e-22 108.6 111 57.7
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 4.1e-22 108.2 109 55.0
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 4.1e-22 108.2 110 52.7
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 5.4e-22 107.8 108 55.6
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 5.4e-22 107.8 114 54.4
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 7.0e-22 107.5 99 57.6
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 7.0e-22 107.5 105 56.2
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 7.0e-22 107.5 117 53.0
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 7.0e-22 107.5 78 69.2
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 9.2e-22 107.1 103 56.3
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 9.2e-22 107.1 141 49.6
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 1.6e-21 106.3 109 53.2
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 3.5e-21 105.1 108 52.8
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 5.9e-21 104.4 105 55.2
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 5.9e-21 104.4 109 54.1
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 7.8e-21 104.0 110 54.5
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 7.8e-21 104.0 55 83.6
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 7.8e-21 104.0 55 83.6
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 1.0e-20 103.6 105 57.1
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 1.3e-20 103.2 109 55.0
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 2.3e-20 102.4 105 52.4
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 3.0e-20 102.1 111 55.0
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 6.6e-20 100.9 79 69.6
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 6.6e-20 100.9 93 59.1
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 6.6e-20 100.9 115 53.9
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 8.6e-20 100.5 120 54.2
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 1.1e-19 100.1 56 80.4
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.1e-19 100.1 103 53.4
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 1.1e-19 100.1 102 56.9
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 1.5e-19 99.8 53 84.9
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 1.9e-19 99.4 102 56.9
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 2.5e-19 99.0 59 76.3
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 2.5e-19 99.0 93 58.1
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 3.3e-19 98.6 113 55.8
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 3.3e-19 98.6 67 67.2
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 4.3e-19 98.2 67 73.1
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 5.6e-19 97.8 109 52.3
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 5.6e-19 97.8 109 52.3
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 5.6e-19 97.8 107 51.4
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 7.3e-19 97.4 104 54.8
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 7.3e-19 97.4 106 53.8
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 9.5e-19 97.1 104 50.0
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.2e-18 96.7 54 81.5
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 2.1e-18 95.9 104 54.8
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 2.8e-18 95.5 55 78.2
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 4.7e-18 94.7 115 48.7
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 8.0e-18 94.0 117 48.7
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 2.3e-17 92.4 110 49.1
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 2.3e-17 92.4 98 55.1
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 3.1e-17 92.0 64 64.1
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 4.0e-17 91.7 115 45.2
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 5.2e-17 91.3 96 54.2
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 8.9e-17 90.5 112 44.6
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 8.9e-17 90.5 98 53.1
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 1.2e-16 90.1 117 46.2
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.0e-16 89.4 114 48.2
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 5.8e-16 87.8 62 66.1
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 7.5e-16 87.4 104 48.1
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 7.5e-16 87.4 64 65.6
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 1.3e-15 86.7 106 50.0
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 1.7e-15 86.3 65 64.6
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.2e-15 85.9 92 51.1
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 2.9e-15 85.5 67 64.2
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 3.7e-15 85.1 48 77.1
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 3.7e-15 85.1 68 63.2
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 1.9e-14 82.8 113 46.9
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 2.4e-14 82.4 100 52.0
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 2.4e-14 82.4 100 52.0
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 9.2e-14 80.5 107 49.5
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 2.0e-13 79.3 109 44.0
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 4.6e-13 78.2 74 56.8
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 6.0e-13 77.8 60 65.0
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 3.0e-12 75.5 88 53.4
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 2.5e-11 72.4 105 45.7
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 9.5e-11 70.5 54 66.7
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 2.0e-08 62.8 44 63.6
BcaB05g23287 Brassica carinata HOM05D006906 ORTHO05D008578 2.2e-07 59.3 105 42.9
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 6.4e-07 57.8 69 50.7
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 1.4e-06 56.6 47 59.6
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 3.2e-06 55.5 39 64.1
SMO367G0828 Selaginella moellendorffii HOM05D006906 ORTHO05D008578 7.1e-06 54.3 50 60.0


User provided reference genes

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