Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 2.5e-38 161.8 90 100.0
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 3.1e-20 101.7 69 81.2
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 2.9e-18 95.1 69 73.9
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 6.4e-18 94.0 66 75.8
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 8.4e-18 93.6 86 59.3
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 1.1e-17 93.2 84 66.7
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 1.1e-17 93.2 84 63.1
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 1.9e-17 92.4 81 65.4
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 4.2e-17 91.3 67 71.6
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 5.4e-17 90.9 72 69.4
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 5.4e-17 90.9 89 60.7
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 7.1e-17 90.5 83 61.4
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 1.6e-16 89.4 92 59.8
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 2.1e-16 89.0 73 64.4
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 2.1e-16 89.0 81 60.5
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 4.6e-16 87.8 80 61.2
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 1.0e-15 86.7 92 54.3
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 1.0e-15 86.7 88 55.7
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 1.0e-15 86.7 88 60.2
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 1.7e-15 85.9 69 65.2
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.7e-15 85.9 80 63.8
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.7e-15 85.9 80 63.8
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 6.6e-15 84.0 89 58.4
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 1.1e-14 83.2 62 69.4
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 1.1e-14 83.2 88 59.1
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 1.9e-14 82.4 93 55.9
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 1.9e-14 82.4 81 56.8
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 5.6e-14 80.9 86 59.3
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 7.3e-14 80.5 72 62.5
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 1.6e-13 79.3 68 61.8
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 2.1e-13 79.0 95 54.7
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 2.1e-13 79.0 95 54.7
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 2.8e-13 78.6 69 62.3
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 3.6e-13 78.2 83 53.0
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 6.2e-13 77.4 83 54.2
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 6.2e-13 77.4 83 54.2
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 8.1e-13 77.0 83 53.0
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 8.1e-13 77.0 69 59.4
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.1e-12 76.6 82 53.7
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-12 76.6 71 60.6
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.1e-12 76.6 87 54.0
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 1.1e-12 76.6 71 59.2
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 1.1e-12 76.6 69 63.8
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 1.8e-12 75.9 82 52.4
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 1.8e-12 75.9 82 52.4
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 1.8e-12 75.9 82 52.4
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.8e-12 75.9 101 53.5
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 2.4e-12 75.5 69 60.9
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.1e-12 75.1 112 45.5
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.1e-12 75.1 112 45.5
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 4.0e-12 74.7 83 51.8
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 4.0e-12 74.7 83 53.0
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 4.0e-12 74.7 82 52.4
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 4.0e-12 74.7 82 51.2
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 4.0e-12 74.7 75 54.7
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 5.3e-12 74.3 89 55.1
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 6.9e-12 73.9 75 54.7
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 1.5e-11 72.8 93 47.3
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 1.5e-11 72.8 70 57.1
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 2.0e-11 72.4 69 55.1
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.4e-11 71.6 68 60.3
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 5.8e-11 70.9 73 53.4
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 7.6e-11 70.5 77 53.2
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 9.9e-11 70.1 69 56.5
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 1.7e-10 69.3 72 52.8
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 1.7e-10 69.3 73 52.1
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 2.2e-10 68.9 84 47.6
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 2.2e-10 68.9 65 58.5
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.2e-10 68.9 68 58.8
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 6.4e-10 67.4 82 48.8
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 8.4e-10 67.0 83 50.6
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 1.9e-09 65.9 80 46.2
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 1.9e-09 65.9 69 50.7
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 2.4e-09 65.5 83 48.2
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 3.2e-09 65.1 69 50.7
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 9.3e-09 63.5 69 49.3
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 9.3e-09 63.5 106 39.6
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 2.7e-08 62.0 45 68.9
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 6.0e-08 60.8 90 45.6
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 3.0e-07 58.5 66 50.0
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.5e-06 56.2 81 42.0
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 2.5e-06 55.5 70 44.3
Zm00001eb388760 Zea mays HOM05D007802 ORTHO05D009879 2.5e-06 55.5 56 55.4
FAN17G1901 Fragaria x ananassa HOM05D003602 ORTHO05D020334 5.6e-06 54.3 41 73.2


User provided reference genes

Program Settings