Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 4.7e-194 681.0 345 100.0
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 1.8e-169 599.4 345 89.3
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 3.1e-169 598.6 344 89.0
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 5.2e-169 597.8 349 88.3
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 7.8e-165 583.9 347 85.6
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 1.3e-159 566.6 345 83.5
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 2.1e-157 559.3 320 85.0
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 2.5e-155 552.4 333 82.9
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 5.6e-155 551.2 362 79.3
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 2.4e-153 545.8 349 79.9
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 5.8e-152 541.2 334 80.2
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 7.6e-152 540.8 316 82.6
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 2.9e-151 538.9 316 81.0
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 3.8e-151 538.5 351 77.8
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 6.4e-151 537.7 352 77.0
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 6.4e-151 537.7 316 81.0
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.1e-150 537.0 356 78.1
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 2.4e-150 535.8 343 79.0
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 3.2e-150 535.4 344 77.9
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 3.2e-150 535.4 316 80.4
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 4.6e-149 531.6 316 80.7
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 6.0e-149 531.2 315 81.3
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.0e-148 530.4 341 78.3
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.0e-148 530.4 315 81.0
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.0e-148 530.4 349 76.5
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 3.9e-148 528.5 349 75.6
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.9e-147 526.2 339 78.2
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 3.3e-147 525.4 342 78.1
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 4.3e-147 525.0 372 73.1
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.6e-147 524.6 352 76.4
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 3.6e-146 521.9 323 79.9
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.1e-145 520.4 320 80.3
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.4e-145 520.0 332 79.5
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 1.4e-145 520.0 306 82.0
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 3.1e-145 518.8 350 75.1
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 6.9e-145 517.7 347 73.2
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 2.6e-144 515.8 344 74.4
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 3.4e-144 515.4 307 82.1
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 5.8e-144 514.6 335 78.5
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 1.7e-143 513.1 355 72.7
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 2.2e-143 512.7 304 83.6
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 2.9e-143 512.3 345 75.4
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.1e-142 510.4 316 78.8
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.1e-142 510.4 317 79.8
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 1.4e-142 510.0 316 78.8
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.4e-142 510.0 379 71.0
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 5.5e-142 508.1 336 76.2
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 2.7e-141 505.8 344 74.1
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 2.3e-140 502.7 340 74.7
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 5.1e-140 501.5 345 75.1
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.5e-139 500.0 356 73.3
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.5e-139 500.0 356 72.5
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 2.5e-139 499.2 305 81.0
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 2.5e-139 499.2 305 79.0
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 3.3e-139 498.8 352 73.6
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 5.6e-139 498.0 341 73.9
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 2.1e-138 496.1 314 75.8
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 2.1e-138 496.1 339 74.0
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 2.1e-138 496.1 352 73.9
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 3.7e-138 495.4 287 83.3
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 4.8e-138 495.0 358 72.3
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.1e-137 493.8 339 72.6
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 4.0e-137 491.9 356 71.9
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 9.0e-137 490.7 343 73.8
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.5e-136 490.0 307 78.5
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 2.0e-136 489.6 311 77.2
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 3.4e-136 488.8 322 74.2
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 7.6e-136 487.6 302 77.5
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 2.2e-135 486.1 345 72.5
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 9.3e-134 480.7 337 71.2
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.2e-133 480.3 396 64.4
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.2e-133 480.3 396 64.4
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 1.6e-133 479.9 316 75.9
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.3e-132 476.9 356 69.9
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.3e-132 476.9 309 75.4
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.1e-131 473.8 353 70.8
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 4.3e-131 471.9 307 75.6
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 9.6e-131 470.7 322 72.0
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 9.0e-129 464.2 322 70.8
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 2.0e-128 463.0 393 63.6
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 4.5e-128 461.8 368 66.6
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.0e-127 460.7 314 75.5
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.0e-124 450.7 380 65.3
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 3.9e-124 448.7 287 77.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 4.3e-123 445.3 311 73.0
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 6.5e-119 431.4 274 76.6
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 9.7e-115 417.5 286 73.4
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.3e-114 417.2 279 73.1
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 9.4e-110 401.0 309 65.4
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 3.0e-108 396.0 303 65.0
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 3.0e-108 396.0 286 72.4
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.1e-105 387.5 287 70.0
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 3.1e-105 386.0 268 73.9
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 5.3e-105 385.2 335 64.2
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 3.2e-102 375.9 237 76.4
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 2.7e-101 372.9 303 59.7
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 1.4e-100 370.5 254 72.8
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.2e-100 368.6 313 66.5
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 8.2e-98 361.3 205 87.8
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.1e-97 360.9 323 57.3
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 7.7e-96 354.8 234 73.9
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 3.6e-93 345.9 271 65.7
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 8.0e-93 344.7 200 84.0
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 3.0e-92 342.8 350 56.9
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 8.5e-87 324.7 307 58.3
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.0e-84 317.8 196 82.7
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.6e-80 303.9 200 74.5
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 7.8e-80 301.6 341 50.1
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 4.1e-73 279.3 223 63.7
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 4.7e-69 265.8 146 89.7
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 6.2e-61 238.8 181 68.5
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 9.9e-59 231.5 285 46.3
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 8.3e-58 228.4 132 83.3
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 1.9e-54 217.2 248 49.6
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 6.8e-52 208.8 120 82.5
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 2.0e-51 207.2 119 85.7
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.6e-48 197.6 138 71.7
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.5e-48 196.4 198 56.1
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 1.0e-47 194.9 130 77.7
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 1.0e-47 194.9 130 77.7
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 1.0e-47 194.9 312 38.8
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.6e-45 187.6 120 75.8
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 2.8e-45 186.8 178 56.2
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 1.1e-44 184.9 126 75.4
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.7e-42 177.6 162 61.1
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 8.7e-39 165.2 143 66.4
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 5.3e-36 156.0 87 86.2
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 4.2e-33 146.4 108 70.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 7.9e-24 115.5 116 55.2
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.4e-20 104.0 82 62.2
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 5.8e-19 99.4 69 68.1
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 2.2e-18 97.4 142 40.8
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 1.6e-16 91.3 81 59.3
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 2.3e-15 87.4 69 62.3
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 2.3e-15 87.4 57 70.2
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 1.9e-14 84.3 62 66.1
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.9e-14 84.3 57 71.9
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.9e-14 84.3 110 45.5
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 1.2e-11 75.1 63 60.3
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 7.2e-09 65.9 36 80.6
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 1.6e-08 64.7 141 33.3
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 4.6e-08 63.2 44 72.7


User provided reference genes

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