Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 8.9e-166 587.0 331 100.0
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 9.9e-141 503.8 331 87.6
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 7.1e-139 497.7 331 86.1
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 4.3e-120 435.3 332 77.1
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 9.0e-118 427.6 337 77.2
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.4e-115 419.5 332 75.3
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 4.3e-112 408.7 329 66.0
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.7e-111 405.6 326 65.0
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 3.7e-111 405.6 331 70.4
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.1e-110 404.1 325 67.4
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.1e-110 404.1 329 69.0
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.1e-110 404.1 329 72.0
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.9e-110 401.4 329 68.4
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.5e-109 400.2 330 65.8
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 4.5e-109 398.7 329 71.4
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 5.8e-109 398.3 329 64.4
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.8e-105 386.7 332 70.2
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 6.7e-105 384.8 325 65.8
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.1e-104 384.0 332 62.7
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.3e-103 378.3 334 62.3
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.2e-103 377.9 323 61.6
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 4.1e-102 375.6 331 68.0
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 9.0e-102 374.4 329 64.7
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.2e-100 369.8 332 62.7
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 8.4e-100 367.9 285 75.4
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.5e-99 366.3 323 59.8
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.5e-99 366.3 323 59.8
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.2e-99 364.8 289 74.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.6e-98 363.6 332 60.5
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 7.9e-98 361.3 338 64.5
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.0e-97 360.9 326 61.0
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.5e-96 357.1 332 59.9
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 2.5e-96 356.3 336 60.4
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.7e-95 352.4 332 58.7
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.4e-94 349.7 332 59.9
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 4.1e-94 349.0 332 62.0
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.2e-93 347.4 331 58.0
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.2e-93 347.4 332 61.4
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.6e-93 346.3 331 60.1
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 3.4e-93 345.9 329 59.9
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.0e-92 344.4 332 58.1
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.3e-92 344.0 331 63.4
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.0e-89 334.3 334 57.8
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 3.9e-89 332.4 333 61.3
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 5.1e-89 332.0 331 55.3
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.5e-88 330.5 333 57.7
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 5.7e-88 328.6 332 58.7
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 5.7e-88 328.6 384 51.8
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.8e-87 325.5 403 52.6
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 6.3e-87 325.1 331 59.8
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.1e-86 324.3 332 56.9
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.4e-86 323.9 331 61.9
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.8e-86 323.6 332 54.5
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.4e-86 323.2 333 62.8
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 3.1e-86 322.8 331 55.0
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 6.9e-86 321.6 330 56.4
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.2e-85 320.9 331 56.5
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 2.2e-84 316.6 318 63.8
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 6.5e-84 315.1 339 61.1
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 8.5e-84 314.7 333 61.9
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 8.5e-84 314.7 333 61.9
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.5e-83 313.2 333 55.6
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 3.2e-83 312.8 331 56.5
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.2e-83 312.8 331 58.9
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 5.5e-83 312.0 333 56.5
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 1.2e-82 310.8 331 58.0
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.2e-82 310.8 331 56.5
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.2e-82 310.8 387 47.5
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 3.6e-82 309.3 336 59.2
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 4.7e-82 308.9 320 58.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.4e-81 307.4 332 53.9
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.3e-81 306.6 332 56.0
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 5.7e-80 302.0 332 58.7
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 7.4e-80 301.6 327 60.9
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.7e-79 300.4 331 55.6
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.8e-79 298.9 331 58.6
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.0e-77 293.5 332 57.8
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.6e-77 293.1 332 57.8
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 5.9e-77 292.0 323 57.3
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.7e-76 290.4 330 53.9
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 3.8e-76 289.3 387 45.5
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 7.2e-75 285.0 329 53.2
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 9.4e-75 284.6 323 52.6
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 8.0e-74 281.6 332 53.0
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.0e-73 281.2 335 54.9
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.4e-73 280.8 309 56.6
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 3.0e-73 279.6 331 56.8
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 6.7e-73 278.5 389 51.9
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.5e-72 277.3 331 51.7
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 8.2e-71 271.6 340 51.8
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.1e-70 269.2 323 53.3
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.7e-69 266.5 325 53.5
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 2.7e-69 266.5 370 45.9
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 4.5e-69 265.8 327 53.8
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.3e-68 264.2 328 50.6
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.3e-68 264.2 323 53.6
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.9e-67 260.4 331 49.2
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 9.4e-67 258.1 195 72.8
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 2.7e-66 256.5 269 55.0
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-65 253.8 326 48.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.8e-65 253.8 306 53.3
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 7.5e-64 248.4 276 51.8
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 9.8e-64 248.1 333 53.2
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 9.8e-64 248.1 326 51.2
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 2.8e-63 246.5 333 52.9
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.8e-63 246.5 333 52.0
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.7e-63 246.1 311 52.7
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.8e-63 245.7 295 46.4
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.8e-62 243.8 263 60.5
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.2e-61 241.1 338 46.2
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.6e-61 240.7 348 45.4
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 4.5e-61 239.2 364 45.1
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 4.5e-61 239.2 334 46.7
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 7.7e-61 238.4 362 50.0
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.7e-60 237.3 382 44.2
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.2e-60 236.9 311 49.5
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.9e-59 233.8 262 58.8
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 3.2e-59 233.0 294 50.7
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 4.2e-59 232.6 365 42.7
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.6e-58 230.7 294 52.4
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 6.1e-58 228.8 275 48.4
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 8.0e-58 228.4 389 41.1
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-57 227.6 294 52.7
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.2e-56 224.6 307 45.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.5e-56 224.2 313 52.1
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.6e-56 223.4 304 44.4
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 9.8e-56 221.5 310 50.6
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 4.1e-54 216.1 332 44.0
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 4.1e-54 216.1 331 44.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 4.1e-54 216.1 331 44.1
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 9.2e-54 214.9 304 48.7
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 4.3e-51 206.1 146 77.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.0e-48 197.2 303 41.6
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.3e-44 184.5 314 40.8
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 7.3e-43 178.7 180 57.8
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 3.6e-42 176.4 225 48.9
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 4.0e-41 172.9 135 76.3
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.2e-40 171.4 177 57.6
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.6e-40 170.2 156 61.5
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 5.8e-40 169.1 123 66.7
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 9.8e-40 168.3 136 75.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.1e-38 164.9 241 49.4
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 4.1e-38 162.9 172 51.7
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.4e-38 162.5 210 42.4
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.2e-37 161.4 327 36.4
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-37 160.6 124 70.2
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.1e-35 154.8 184 52.2
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.3e-35 152.9 359 32.6
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 4.7e-34 149.4 146 54.1
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 6.2e-34 149.1 193 49.7
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 8.1e-34 148.7 262 46.9
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-32 144.8 153 51.0
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-32 144.8 153 51.0
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.3e-31 141.4 290 38.6
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 4.9e-31 139.4 105 72.4
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 2.1e-29 134.0 308 32.8
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 4.6e-29 132.9 124 54.0
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.6e-29 132.9 293 37.9
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.0e-28 131.7 175 48.6
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.2e-26 124.8 264 35.2
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.1e-25 120.2 365 28.8
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 4.6e-21 106.3 295 34.9
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-20 104.4 95 64.2
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 9.6e-19 98.6 86 60.5
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.1e-18 97.4 96 52.1
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 3.6e-18 96.7 124 43.5
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 3.6e-18 96.7 124 43.5
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.8e-17 94.4 274 33.9
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 2.0e-16 90.9 123 48.8
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 2.0e-16 90.9 123 48.8
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 5.8e-16 89.4 331 29.9
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 7.6e-16 89.0 114 45.6
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-15 87.8 60 70.0
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.9e-15 86.3 48 79.2
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 3.9e-12 76.6 91 56.0
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 4.3e-11 73.2 100 48.0
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.1e-09 67.0 226 30.1
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-08 65.1 51 56.9
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 2.4e-06 57.4 89 37.1
RcHm_v2.0_Chr5g0044491 Rosa chinensis HOM05D003707 ORTHO05D004309 3.2e-06 57.0 39 79.5
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.1e-06 55.8 34 73.5
SMO174G0209 Selaginella moellendorffii HOM05D019185 ORTHO05D031160 7.1e-06 55.8 85 36.5


User provided reference genes

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