Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 2004.2 1012 100.0
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1848.2 1016 91.7
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1761.9 1012 87.0
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1756.1 1012 86.4
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1751.5 1037 85.0
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1741.1 1037 84.5
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1738.8 1030 85.1
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1737.2 1048 83.8
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1671.0 1004 82.6
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1664.4 1005 82.7
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1628.6 1015 81.2
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1612.4 963 83.4
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1599.3 1006 80.2
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1598.2 1008 80.2
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1597.4 1006 79.8
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1593.9 1021 78.7
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1577.8 1020 77.9
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1570.1 1005 78.4
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1567.4 1004 78.9
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1563.9 1007 78.5
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1559.3 1005 77.2
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1557.0 1008 78.7
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1555.0 1010 77.8
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1547.7 1010 76.9
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1545.8 1007 77.8
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1530.0 1006 76.5
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1529.6 1028 75.2
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1528.5 1009 77.4
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1527.7 1014 77.2
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1522.7 1015 75.8
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1521.5 1012 75.4
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1520.8 1005 76.7
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1517.3 1009 76.6
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1516.9 1006 76.2
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1514.2 1011 75.2
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1506.9 1011 75.0
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1506.9 1005 76.4
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1506.1 1008 75.6
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1505.7 1011 74.9
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1497.3 1009 75.1
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1496.9 1007 75.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1491.5 1004 74.9
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1488.4 1005 75.6
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1487.6 1008 75.0
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1486.9 1011 74.8
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1482.6 1010 74.4
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1482.6 1013 74.2
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1479.9 1012 74.5
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1478.4 1011 74.9
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1476.8 1011 74.9
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1476.8 1004 73.4
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1476.5 1011 74.9
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1476.1 1011 75.0
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1010 75.2
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1474.5 1007 74.1
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1011 74.7
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1472.2 924 80.4
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1470.7 1061 71.7
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1464.9 1016 73.6
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1464.5 970 77.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1463.7 1011 74.2
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1461.8 1010 73.6
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1461.4 1005 73.2
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1459.5 1005 72.7
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1457.2 1043 71.9
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1456.0 967 76.7
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1456.0 1005 72.5
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1452.6 1036 72.0
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1448.0 1010 73.0
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1444.9 1014 72.0
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1442.6 1080 69.5
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1440.6 1007 73.0
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1438.7 1044 70.5
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1432.2 1007 72.2
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1431.4 984 73.3
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1424.1 1004 73.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1418.7 1027 72.1
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1412.9 1005 71.3
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1403.3 1028 68.8
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1398.6 1016 69.9
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1398.6 813 88.4
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1395.2 1106 66.8
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1387.5 1012 69.7
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1382.9 1011 69.4
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1374.4 1016 68.4
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1363.6 1011 68.2
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1362.8 1007 70.4
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1362.4 1004 70.5
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1362.4 1006 69.6
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1356.3 983 70.2
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1329.3 1036 66.3
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1328.5 1028 66.8
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1322.8 1026 66.5
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1321.6 1007 67.0
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1307.4 1024 66.3
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1307.0 1010 67.9
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1305.4 963 69.9
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1302.0 987 67.5
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1298.9 1139 60.1
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1290.0 1014 66.6
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1288.1 1015 66.6
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1287.7 1005 66.5
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1282.3 1172 58.4
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1280.8 1032 64.5
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1258.4 950 67.7
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1258.4 1006 66.2
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1256.9 1035 63.6
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1253.8 912 69.8
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1248.4 856 74.5
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1241.5 1008 64.8
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1238.4 1014 64.0
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1236.1 1012 64.0
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1218.8 1014 62.4
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1214.5 1013 61.8
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1206.8 1016 62.5
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1194.1 1009 60.6
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1190.3 984 65.8
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1149.4 896 67.0
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1139.4 855 68.0
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1116.7 937 61.9
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 9.0e-302 1040.4 945 60.4
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.5e-288 996.5 618 81.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 6.0e-282 974.5 871 59.7
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.1e-275 953.7 774 65.4
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.4e-275 953.4 623 77.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 9.3e-275 950.7 1027 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 5.9e-269 931.4 1056 48.8
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.2e-253 880.6 983 49.4
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 8.8e-249 864.4 637 70.5
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.9e-244 849.4 1022 47.3
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 4.4e-240 835.5 1027 46.6
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 4.0e-233 812.4 620 67.3
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.5e-224 783.9 1232 41.4
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 6.1e-218 761.9 877 46.8
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 3.9e-188 662.9 391 83.4
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 3.3e-179 633.3 360 85.6
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.1e-169 601.7 389 77.1
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 7.6e-160 568.9 432 69.7
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 9.3e-158 562.0 466 65.0
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.7e-157 560.5 595 52.1
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.7e-146 524.6 529 55.8
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.0e-115 421.4 237 88.2
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.7e-106 391.7 205 88.8
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 6.3e-106 389.8 262 74.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-102 378.6 274 70.4
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 6.4e-90 336.7 239 70.7
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 6.6e-87 326.6 235 72.3
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.4e-84 318.9 845 29.2
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 6.0e-80 303.5 162 86.4
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.9e-74 283.9 150 88.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.5e-62 245.7 174 67.8
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.3e-58 232.6 252 54.0
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.4e-58 230.3 289 50.9
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.9e-54 218.8 194 66.5
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 4.2e-49 201.1 114 77.2
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 2.3e-47 195.3 511 30.9
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-41 176.4 150 60.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 9.3e-41 173.3 228 46.9
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.3e-39 169.5 90 78.9
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 2.5e-38 165.2 137 64.2
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 6.5e-34 150.6 131 61.1
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.8e-31 142.5 72 86.1
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 3.9e-31 141.4 77 81.8
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 5.0e-26 124.4 95 68.4
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.1e-25 123.2 81 75.3
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.1e-24 117.5 96 61.5
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 2.8e-21 108.6 79 68.4
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.8e-21 108.6 79 68.4
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.8e-21 108.6 79 68.4
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.6e-16 92.8 109 55.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 3.0e-15 88.6 78 53.8
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 8.2e-13 80.5 79 57.0
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.2e-10 72.4 46 71.7
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-09 68.9 65 52.3
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 3.2e-09 68.6 71 59.2


User provided reference genes

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