Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 4.3e-239 830.9 400 100.0
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.3e-200 703.0 400 85.8
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 1.0e-192 676.8 351 91.7
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.1e-177 625.9 390 78.5
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 5.1e-176 621.3 388 78.6
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.1e-176 621.3 388 78.6
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.3e-175 618.6 384 76.3
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.7e-174 615.1 348 84.5
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 4.8e-174 614.8 387 76.7
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 8.2e-174 614.0 360 82.2
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.9e-171 605.5 385 75.8
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.8e-168 596.3 373 76.7
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.1e-167 593.6 373 76.4
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.5e-167 593.2 387 73.9
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.5e-167 593.2 398 73.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.5e-167 592.4 373 76.4
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 4.3e-167 591.7 360 78.9
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 5.7e-167 591.3 400 73.5
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.7e-166 589.7 367 76.8
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 4.8e-166 588.2 365 75.9
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.1e-165 587.0 403 72.7
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.4e-165 586.6 383 74.7
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 1.8e-165 586.3 392 74.2
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 4.1e-165 585.1 372 75.3
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.2e-164 583.6 394 73.1
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.5e-164 583.2 396 72.7
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.5e-164 583.2 362 77.9
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 3.4e-164 582.0 362 76.2
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 3.4e-164 582.0 379 74.9
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 3.4e-164 582.0 403 72.5
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.3e-163 580.1 367 75.7
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.2e-163 579.3 398 72.1
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.9e-163 578.9 398 72.4
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 3.8e-163 578.6 361 75.6
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 6.5e-163 577.8 407 72.2
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 9.4e-162 573.9 367 74.9
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.6e-161 573.2 395 71.4
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.7e-161 572.4 360 75.6
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.0e-160 570.5 348 76.7
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.4e-160 570.1 380 72.1
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.8e-160 569.7 399 71.2
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 8.8e-160 567.4 347 77.2
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.1e-159 567.0 390 71.5
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.1e-159 567.0 403 70.2
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.5e-159 566.6 375 72.3
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 4.4e-159 565.1 377 71.9
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 5.7e-159 564.7 348 76.4
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 9.7e-159 563.9 404 70.3
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.3e-158 563.5 363 73.0
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-158 563.1 404 70.0
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 2.8e-158 562.4 377 71.6
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 2.8e-158 562.4 377 71.6
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 4.8e-158 561.6 364 74.5
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 4.8e-158 561.6 404 70.0
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.1e-157 560.5 345 76.5
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.4e-157 559.3 391 70.6
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 4.1e-157 558.5 402 70.4
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 7.0e-157 557.8 402 70.6
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.1e-157 557.4 359 75.2
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.2e-156 557.0 402 69.9
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.2e-156 557.0 402 69.9
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.5e-156 555.4 358 75.1
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 6.5e-155 551.2 353 74.2
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 6.5e-155 551.2 371 71.2
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 6.5e-155 551.2 370 72.7
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.5e-154 549.3 354 73.7
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 2.5e-154 549.3 387 68.2
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 7.2e-154 547.7 348 75.6
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 9.4e-154 547.4 361 71.7
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.1e-153 546.2 347 77.2
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.1e-153 546.2 339 75.8
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.3e-152 542.7 340 74.4
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.1e-151 540.4 327 74.9
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.0e-151 539.7 386 68.7
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.6e-151 539.3 396 66.9
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 4.4e-151 538.5 392 67.6
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.3e-150 537.0 391 69.6
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-150 536.6 377 69.8
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 6.3e-150 534.6 387 68.7
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.1e-149 533.9 348 73.6
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 3.1e-149 532.3 397 66.0
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 7.0e-149 531.2 398 65.3
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.6e-148 530.0 359 69.6
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.6e-148 529.3 398 65.3
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 7.7e-148 527.7 357 73.4
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.3e-147 526.9 374 69.0
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.7e-147 526.6 347 72.9
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.8e-147 525.4 373 68.6
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 6.5e-147 524.6 373 69.2
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 6.5e-147 524.6 387 66.4
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.5e-146 522.7 359 69.4
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 4.2e-146 521.9 390 66.4
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 5.5e-146 521.5 387 66.1
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 9.4e-146 520.8 398 64.6
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 2.1e-145 519.6 376 67.6
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 4.7e-145 518.5 386 66.6
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.1e-145 518.1 309 78.0
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.0e-144 517.3 384 67.2
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.3e-144 516.2 371 67.9
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 2.3e-144 516.2 380 67.1
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 8.8e-144 514.2 305 77.7
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.2e-143 513.8 336 73.2
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 3.4e-143 512.3 348 70.7
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 5.7e-143 511.5 379 67.3
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.7e-142 510.0 363 67.8
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.8e-142 509.2 359 68.0
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.3e-142 507.7 345 69.3
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 8.3e-142 507.7 392 64.5
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.3e-142 507.7 405 65.2
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 5.4e-141 505.0 345 70.7
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 3.8e-139 498.8 359 66.9
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.3e-136 489.6 361 65.1
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 6.3e-134 481.5 378 60.8
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.2e-132 477.2 348 66.1
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 2.7e-132 476.1 389 62.2
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.7e-131 473.4 285 80.7
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.5e-130 470.3 371 63.1
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 3.7e-126 455.7 363 63.9
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 4.1e-125 452.2 341 63.6
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 9.2e-125 451.1 359 62.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.9e-124 448.4 321 65.4
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 2.3e-123 446.4 363 60.3
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.0e-120 437.6 347 62.0
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.0e-119 433.3 355 59.2
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.7e-116 422.9 387 57.1
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.7e-115 420.2 231 81.0
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 3.0e-115 419.5 389 57.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.5e-111 407.1 328 59.1
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.4e-111 406.0 304 64.5
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.7e-110 403.7 340 55.9
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.3e-107 393.3 198 89.9
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 7.3e-106 388.3 316 61.4
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.2e-103 380.9 206 84.5
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 4.4e-95 352.4 198 80.8
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 5.3e-88 328.9 219 73.1
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 7.6e-87 325.1 233 71.2
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.9e-86 323.2 296 55.4
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 3.8e-86 322.8 177 84.7
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.0e-83 313.2 229 68.6
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 4.3e-82 309.3 231 65.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 6.0e-76 288.9 221 66.1
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.5e-74 284.3 304 45.7
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 5.6e-74 282.3 401 37.9
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.5e-71 272.7 262 54.6
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.1e-68 263.8 344 40.7
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 3.9e-59 233.0 375 36.5
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 3.9e-59 233.0 197 58.4
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.5e-50 204.5 346 36.1
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 8.5e-46 188.7 125 73.6
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.3e-40 169.5 148 60.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 5.3e-32 142.9 121 57.0
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.1e-32 142.1 117 61.5
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.0e-22 112.1 66 77.3
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 3.8e-22 110.2 57 84.2
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 1.7e-06 58.2 43 65.1


User provided reference genes

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