Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 9.2e-273 943.0 480 100.0
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 3.0e-247 858.2 480 90.6
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.1e-246 856.3 475 91.2
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 5.6e-246 854.0 475 91.2
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 9.9e-243 843.2 475 90.1
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 1.1e-236 823.2 480 88.5
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 3.5e-232 808.1 481 87.9
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 2.7e-224 781.9 479 81.6
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 3.9e-223 778.1 479 80.8
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 1.1e-220 770.0 479 80.8
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 6.9e-220 767.3 421 92.6
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 4.5e-219 764.6 479 79.5
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 5.5e-217 757.7 479 80.2
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 3.6e-216 755.0 480 79.6
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 3.6e-216 755.0 480 79.4
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 3.6e-216 755.0 480 78.8
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 5.7e-214 747.7 479 79.5
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 8.2e-213 743.8 479 78.9
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 8.2e-213 743.8 479 79.3
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 1.8e-212 742.7 480 79.0
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 9.1e-212 740.3 479 78.7
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 1.2e-211 740.0 480 77.1
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.2e-211 740.0 480 77.3
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 1.2e-211 740.0 476 78.6
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 3.5e-211 738.4 479 78.3
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 3.5e-211 738.4 483 77.6
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 1.0e-210 736.9 480 76.9
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 1.3e-210 736.5 481 78.8
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.7e-210 736.1 481 78.0
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 2.9e-210 735.3 479 77.2
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.9e-210 735.3 480 76.5
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 6.5e-210 734.2 479 78.5
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 3.2e-209 731.9 516 73.1
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 5.5e-209 731.1 479 77.9
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.2e-208 729.9 480 77.7
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 2.1e-208 729.2 483 77.2
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 3.6e-208 728.4 480 77.9
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 8.0e-208 727.2 483 76.6
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 1.4e-207 726.5 496 75.8
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 6.7e-207 724.2 479 75.8
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 8.8e-207 723.8 479 77.7
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 8.8e-207 723.8 479 75.8
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 5.7e-206 721.1 479 77.5
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 6.3e-205 717.6 479 76.8
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 5.3e-204 714.5 479 74.9
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 1.2e-203 713.4 510 72.7
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 7.7e-203 710.7 479 75.6
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 6.5e-202 707.6 480 74.6
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 1.1e-201 706.8 478 76.6
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 1.5e-201 706.4 479 74.9
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 5.5e-201 704.5 480 71.9
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.4e-199 699.9 481 73.2
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 1.8e-199 699.5 485 73.0
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 2.3e-199 699.1 477 73.8
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 2.3e-199 699.1 479 73.5
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 3.0e-199 698.7 485 73.0
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 6.8e-199 697.6 477 73.8
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 1.5e-198 696.4 480 75.8
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 1.5e-198 696.4 479 73.1
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 1.5e-198 696.4 485 72.6
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 5.7e-198 694.5 480 72.9
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 7.5e-198 694.1 480 73.3
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 1.7e-197 693.0 485 72.0
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 9.1e-196 687.2 479 73.3
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 2.0e-195 686.0 480 72.5
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 2.2e-194 682.6 480 72.5
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 6.5e-194 681.0 480 71.9
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 9.4e-193 677.2 480 75.4
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.2e-192 676.8 480 72.3
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.0e-191 673.7 481 71.7
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.8e-191 672.9 478 72.4
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 5.2e-191 671.4 477 73.0
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 1.3e-189 666.8 481 70.7
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 3.7e-189 665.2 481 70.9
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 3.7e-189 665.2 481 70.9
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 3.7e-189 665.2 481 70.9
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.7e-189 665.2 480 70.0
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 1.8e-188 662.9 421 79.6
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 1.2e-187 660.2 480 70.4
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 5.9e-187 657.9 481 70.3
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 2.9e-186 655.6 474 73.8
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 7.2e-185 651.0 533 64.9
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 3.4e-182 642.1 479 70.1
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 3.7e-181 638.6 480 68.1
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 7.0e-180 634.4 480 69.6
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 7.0e-180 634.4 486 67.5
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 1.1e-177 627.1 476 68.7
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.6e-176 623.2 423 73.8
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 2.8e-176 622.5 478 67.2
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 8.9e-175 617.5 496 66.3
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 9.8e-174 614.0 375 81.9
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 9.8e-174 614.0 483 66.3
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 1.7e-173 613.2 477 67.1
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 1.1e-172 610.5 429 74.4
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 1.9e-172 609.8 479 67.8
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 5.4e-172 608.2 375 83.7
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 2.0e-171 606.3 442 71.5
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 7.8e-171 604.4 480 65.6
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 4.9e-165 585.1 581 56.6
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 1.9e-164 583.2 382 76.4
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 2.7e-163 579.3 379 75.2
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.0e-154 550.8 486 60.3
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 5.2e-151 538.5 338 81.1
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 2.0e-150 536.6 480 60.0
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 5.1e-138 495.4 309 79.3
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 5.6e-129 465.3 316 75.3
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 1.8e-127 460.3 809 38.7
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 2.4e-127 459.9 345 68.4
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 1.2e-126 457.6 376 62.2
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 3.4e-126 456.1 477 52.8
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 4.6e-115 419.1 451 53.7
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.0e-114 416.4 449 52.8
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 3.3e-113 412.9 451 52.8
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 8.2e-112 408.3 452 52.2
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.8e-111 407.1 471 51.2
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 2.0e-110 403.7 452 51.5
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 3.4e-110 402.9 451 52.1
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.1e-108 397.9 449 51.7
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 3.3e-105 386.3 452 50.4
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 8.2e-104 381.7 443 48.3
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 3.1e-103 379.8 410 52.0
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 5.3e-103 379.0 249 77.5
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 5.9e-102 375.6 369 56.1
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 2.2e-101 373.6 368 55.4
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 1.0e-98 364.8 408 51.5
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 2.4e-95 353.6 228 77.2
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.6e-91 340.9 240 72.9
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 5.2e-90 335.9 494 42.7
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 5.5e-84 315.8 449 45.4
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.5e-81 307.8 251 64.1
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 1.3e-77 294.7 490 38.6
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 5.0e-61 239.6 312 46.8
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 3.2e-55 220.3 176 66.5
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.1e-52 211.8 200 56.5
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 6.0e-46 189.5 203 52.2
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 1.5e-44 184.9 429 32.4
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 2.3e-37 161.0 102 73.5
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 2.5e-36 157.5 515 28.9
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.2e-33 148.7 106 65.1
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 1.9e-20 104.8 91 57.1
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 3.4e-17 94.0 143 37.8
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 7.4e-12 76.3 62 64.5
SEGI_07227 Sequoiadendron giganteum HOM05D001663 ORTHO05D015595 2.0e-09 68.2 81 43.2
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 8.4e-08 62.8 372 22.6
HanXRQChr01g0001151 Helianthus annuus HOM05D001663 ORTHO05D005717 4.6e-06 57.0 141 36.2


User provided reference genes

Program Settings