Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 5.7e-49 197.2 96 100.0
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 2.4e-39 165.2 94 83.0
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 2.9e-37 158.3 96 77.1
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.9e-37 158.3 96 77.1
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 3.9e-37 157.9 96 77.1
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.0e-37 157.5 96 77.1
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.0e-37 157.5 96 77.1
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.5e-36 156.0 96 76.0
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 2.5e-36 155.2 96 77.1
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 4.3e-36 154.5 96 78.1
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 9.5e-36 153.3 96 77.1
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 1.6e-35 152.5 96 75.0
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 3.6e-35 151.4 98 76.5
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 4.7e-35 151.0 96 76.0
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 1.4e-34 149.4 98 75.5
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 1.4e-34 149.4 96 71.9
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 1.8e-34 149.1 100 75.0
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.3e-34 148.7 96 76.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 4.0e-34 147.9 100 75.0
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 4.0e-34 147.9 96 75.0
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 4.0e-34 147.9 96 75.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 8.9e-34 146.7 100 75.0
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.2e-33 146.4 96 74.0
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 1.5e-33 146.0 98 74.5
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 1.5e-33 146.0 100 73.0
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 2.0e-33 145.6 96 74.0
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 2.0e-33 145.6 96 75.0
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 2.6e-33 145.2 97 73.2
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 5.8e-33 144.1 100 73.0
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 5.8e-33 144.1 98 73.5
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 7.5e-33 143.7 97 74.2
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 7.5e-33 143.7 98 75.5
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 9.8e-33 143.3 96 70.8
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.3e-32 142.9 100 74.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.3e-32 142.9 100 74.0
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 1.3e-32 142.9 100 73.0
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 1.3e-32 142.9 97 73.2
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.3e-32 142.9 97 72.2
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-32 142.5 97 72.2
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-32 142.5 97 72.2
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-32 142.5 97 72.2
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 74.5
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 74.5
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.7e-32 142.5 100 73.0
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 1.7e-32 142.5 97 72.2
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 2.2e-32 142.1 97 72.2
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 2.2e-32 142.1 97 72.2
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 2.2e-32 142.1 97 73.2
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 74.5
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.2e-32 142.1 97 73.2
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 2.9e-32 141.7 96 70.8
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 3.7e-32 141.4 97 71.1
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 4.9e-32 141.0 97 71.1
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 4.9e-32 141.0 97 71.1
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 4.9e-32 141.0 97 71.1
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.9e-32 141.0 98 73.5
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 70.1
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 71.1
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 71.1
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 71.1
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 74.2
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 71.1
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 1.4e-31 139.4 98 68.4
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 1.4e-31 139.4 99 73.7
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 1.9e-31 139.0 98 70.4
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 1.9e-31 139.0 97 70.1
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 1.9e-31 139.0 97 70.1
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 1.9e-31 139.0 99 72.7
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 2.4e-31 138.7 98 70.4
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 2.4e-31 138.7 98 70.4
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 2.4e-31 138.7 97 70.1
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 4.1e-31 137.9 97 71.1
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 4.1e-31 137.9 97 68.0
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 5.4e-31 137.5 100 72.0
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 5.4e-31 137.5 97 70.1
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 5.4e-31 137.5 97 70.1
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 5.4e-31 137.5 97 70.1
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 5.4e-31 137.5 97 70.1
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 5.4e-31 137.5 97 70.1
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 5.4e-31 137.5 100 68.0
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 7.0e-31 137.1 98 67.3
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 7.0e-31 137.1 98 69.4
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 7.0e-31 137.1 98 69.4
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 1.6e-30 136.0 97 68.0
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.6e-30 136.0 99 69.7
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 2.0e-30 135.6 96 68.8
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 2.0e-30 135.6 96 68.8
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.7e-30 135.2 101 66.3
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 2.7e-30 135.2 98 71.4
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 2.7e-30 135.2 98 69.4
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 3.5e-30 134.8 95 68.4
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.5e-30 134.8 98 67.3
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 3.5e-30 134.8 100 69.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 3.5e-30 134.8 100 69.0
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 3.5e-30 134.8 100 70.0
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 4.6e-30 134.4 102 68.6
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 4.6e-30 134.4 97 68.0
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 7.8e-30 133.7 96 71.9
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.7e-29 132.5 99 65.7
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 68.4
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 72.4
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 3.9e-29 131.3 98 67.3
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 3.9e-29 131.3 98 67.3
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 5.0e-29 131.0 98 70.4
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 5.0e-29 131.0 98 67.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 6.6e-29 130.6 97 63.9
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 6.6e-29 130.6 88 69.3
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 8.6e-29 130.2 91 70.3
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.9e-28 129.0 97 66.0
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.9e-28 129.0 88 69.3
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 3.3e-28 128.3 107 61.7
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.3e-28 128.3 73 80.8
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 7.3e-28 127.1 98 66.3
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 7.3e-28 127.1 96 69.8
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 9.5e-28 126.7 98 65.3
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 1.2e-27 126.3 100 67.0
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 1.2e-27 126.3 104 64.4
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 1.2e-27 126.3 95 66.3
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 1.6e-27 125.9 102 64.7
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 2.8e-27 125.2 99 64.6
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.8e-27 125.2 73 79.5
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.8e-27 125.2 73 79.5
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.8e-27 125.2 73 79.5
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 2.8e-27 125.2 98 68.4
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.8e-27 125.2 89 68.5
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.6e-27 124.8 98 67.3
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 3.6e-27 124.8 97 67.0
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 8.0e-27 123.6 75 80.0
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 8.0e-27 123.6 121 55.4
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.4e-26 122.9 100 67.0
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 1.4e-26 122.9 94 64.9
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 3.1e-26 121.7 102 65.7
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 4.0e-26 121.3 97 63.9
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 4.0e-26 121.3 97 63.9
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.0e-25 119.0 71 80.3
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 3.4e-25 118.2 88 67.0
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 4.4e-25 117.9 97 61.9
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 5.8e-25 117.5 98 59.2
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 7.5e-25 117.1 97 61.9
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 7.5e-25 117.1 87 67.8
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 9.8e-25 116.7 98 59.2
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 8.3e-24 113.6 156 44.9
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 3.2e-23 111.7 91 58.2
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 7.1e-23 110.5 71 77.5
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 2.3e-21 105.5 73 72.6
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 3.0e-21 105.1 107 52.3
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 6.6e-21 104.0 85 60.0
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.1e-20 103.2 63 79.4
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 1.9e-20 102.4 59 79.7
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 1.2e-19 99.8 63 77.8
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 1.4e-15 86.3 71 53.5
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 1.7e-13 79.3 88 45.5
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 4.7e-11 71.2 73 47.9
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 4.0e-10 68.2 81 50.6
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 5.8e-09 64.3 77 46.8
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 2.1e-06 55.8 52 51.9


User provided reference genes

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