Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 2.1e-73 278.9 136 100.0
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 2.4e-69 265.4 136 94.1
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 6.0e-68 260.8 136 91.2
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 91.2
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 91.2
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 91.2
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 91.2
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 1.7e-67 259.2 135 91.1
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 89.7
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 1.5e-66 256.1 136 89.7
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 89.0
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 89.0
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 89.0
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 89.7
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 88.2
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 9.5e-66 253.4 136 88.2
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 88.2
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 88.2
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 87.5
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 88.2
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 86.8
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 87.5
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 88.2
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 3.6e-65 251.5 135 88.1
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 6.2e-65 250.8 136 86.8
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 86.8
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 86.8
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 86.8
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 87.5
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 86.0
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 86.0
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.8e-64 249.2 136 85.3
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 1.8e-64 249.2 136 87.5
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 83.8
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 85.3
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 86.8
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 86.8
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 5.2e-64 247.7 135 85.9
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 86.0
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 86.0
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 8.9e-64 246.9 136 86.0
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 85.3
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 86.0
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 86.0
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.2e-63 246.5 135 85.2
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.5e-63 246.1 135 84.4
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 1.5e-63 246.1 135 85.2
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 84.6
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 84.6
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 86.0
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 3.4e-63 245.0 135 87.4
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 83.8
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 83.8
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 83.8
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 83.8
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 4.4e-63 244.6 135 83.7
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 5.8e-63 244.2 133 85.7
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 7.6e-63 243.8 136 82.4
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 7.6e-63 243.8 136 83.8
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 83.8
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 84.6
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 1.3e-62 243.0 136 84.6
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 1.3e-62 243.0 136 83.1
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.7e-62 242.7 136 83.1
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 2.2e-62 242.3 133 86.5
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 2.9e-62 241.9 136 84.6
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 3.8e-62 241.5 136 82.4
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 6.4e-62 240.7 136 83.8
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 8.4e-62 240.4 136 83.8
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 8.4e-62 240.4 136 84.6
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 1.1e-61 240.0 136 83.1
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 1.1e-61 240.0 136 83.8
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 1.1e-61 240.0 136 83.1
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.4e-61 239.6 136 81.6
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 1.4e-61 239.6 136 81.6
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 1.4e-61 239.6 136 83.8
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 1.9e-61 239.2 136 83.1
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 3.2e-61 238.4 132 86.4
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 5.4e-61 237.7 136 82.4
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 9.2e-61 236.9 136 80.9
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 9.2e-61 236.9 136 81.6
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 1.2e-60 236.5 136 81.6
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 1.6e-60 236.1 136 80.9
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 2.1e-60 235.7 138 82.6
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 6.0e-60 234.2 136 84.6
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 7.8e-60 233.8 136 83.8
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 7.8e-60 233.8 135 81.5
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 2.5e-58 228.8 124 86.3
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 5.6e-58 227.6 124 84.7
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 9.6e-58 226.9 124 85.5
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 9.6e-58 226.9 124 87.9
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 9.6e-58 226.9 129 82.9
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 3.1e-56 221.9 124 85.5
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 9.0e-56 220.3 124 88.7
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.0e-55 219.2 118 88.1
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 3.4e-55 218.4 131 77.9
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.4e-55 218.4 124 83.9
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 4.4e-55 218.0 133 76.7
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 5.8e-55 217.6 133 75.9
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.3e-54 216.5 133 74.4
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 1.1e-53 213.4 134 75.4
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 3.2e-53 211.8 134 76.9
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 4.2e-53 211.5 133 74.4
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.2e-52 209.9 132 72.7
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 1.1e-50 203.4 120 80.8
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 1.5e-50 203.0 206 53.4
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 1.4e-48 196.4 136 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 2.4e-48 195.7 133 65.4
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 6.9e-48 194.1 130 70.0
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 2.6e-47 192.2 102 86.3
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 2.1e-44 182.6 134 62.7
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.8e-43 179.5 134 60.4
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 6.2e-41 171.0 151 57.0
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 3.1e-40 168.7 128 60.9
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.8e-38 161.8 92 83.7
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 3.8e-38 161.8 125 68.0
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 4.2e-37 158.3 76 93.4
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 6.0e-36 154.5 92 76.1
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 6.0e-36 154.5 91 81.3
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 5.1e-35 151.4 74 90.5
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 5.1e-35 151.4 74 90.5
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 5.1e-35 151.4 75 88.0
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 1.6e-33 146.4 75 84.0
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 2.1e-33 146.0 74 87.8
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 8.2e-33 144.1 74 82.4
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 8.2e-33 144.1 74 82.4
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 5.8e-31 137.9 73 83.6
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 3.5e-28 128.6 88 70.5
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 5.3e-24 114.8 140 49.3
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 3.4e-23 112.1 129 39.5
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 1.6e-20 103.2 72 72.2
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 1.3e-17 93.6 117 45.3
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 1.7e-17 93.2 47 87.2
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 4.5e-15 85.1 50 88.0
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 2.2e-14 82.8 165 39.4
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 3.8e-14 82.0 125 38.4
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 4.4e-10 68.6 70 57.1
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 9.7e-10 67.4 35 80.0
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.6e-07 59.3 67 50.7
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 2.9e-06 55.8 134 31.3


User provided reference genes

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