Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 6.4e-257 890.2 434 100.0
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 1.8e-203 712.6 437 80.8
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 2.1e-175 619.4 436 73.4
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 2.3e-169 599.4 438 70.3
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 9.5e-168 594.0 432 70.6
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 3.8e-148 528.9 399 68.7
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 5.1e-145 518.5 445 61.1
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 9.0e-142 507.7 432 59.3
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 4.9e-140 501.9 425 60.7
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 2.4e-139 499.6 435 57.7
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 9.3e-139 497.7 435 57.9
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 1.5e-136 490.3 432 57.4
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 1.2e-133 480.7 443 55.5
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 5.8e-133 478.4 430 55.8
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 1.3e-132 477.2 431 57.8
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 6.0e-130 468.4 431 56.4
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 3.9e-129 465.7 450 53.6
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 6.7e-129 464.9 414 59.4
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 3.3e-128 462.6 435 55.2
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 9.6e-128 461.1 435 53.6
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 3.1e-126 456.1 431 54.3
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 3.1e-126 456.1 431 53.8
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 4.0e-126 455.7 440 54.5
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 1.4e-123 447.2 431 53.8
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 4.2e-123 445.7 466 52.1
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 4.6e-122 442.2 440 53.0
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 4.0e-118 429.1 442 51.6
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 9.0e-118 427.9 447 51.0
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 5.5e-115 418.7 429 50.1
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 5.5e-115 418.7 440 50.7
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 2.1e-114 416.8 444 50.9
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 2.7e-114 416.4 431 53.6
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 1.8e-113 413.7 439 50.6
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 2.3e-113 413.3 434 50.7
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 2.5e-112 409.8 431 50.8
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 3.3e-112 409.5 444 50.0
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 7.4e-112 408.3 459 49.2
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 3.7e-111 406.0 438 49.3
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 4.8e-111 405.6 448 48.4
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 1.4e-110 404.1 431 49.7
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 2.4e-110 403.3 448 48.2
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 5.3e-110 402.1 432 48.6
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 5.9e-109 398.7 429 48.5
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 1.0e-108 397.9 373 55.8
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 1.3e-108 397.5 437 47.4
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 2.2e-108 396.7 447 48.8
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 3.2e-107 392.9 437 49.0
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 1.2e-106 391.0 439 48.1
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 6.1e-106 388.7 515 43.3
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 2.0e-104 383.6 439 47.4
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 5.0e-100 369.0 361 52.6
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 5.1e-97 359.0 404 47.5
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 9.7e-96 354.8 409 46.9
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 4.1e-94 349.4 385 49.4
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 1.7e-92 344.0 436 44.5
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 3.3e-88 329.7 384 45.3
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 4.8e-87 325.9 434 42.2
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 9.1e-86 321.6 459 43.4
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 1.0e-84 318.2 315 54.6
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 5.0e-84 315.8 386 45.1
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 1.6e-82 310.8 437 41.9
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 8.0e-82 308.5 449 42.5
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 5.7e-80 302.4 356 47.5
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 7.5e-80 302.0 379 44.6
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 4.1e-78 296.2 434 42.4
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 2.1e-74 283.9 464 40.1
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 7.7e-69 265.4 261 52.5
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 2.7e-61 240.4 331 42.6
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 1.0e-57 228.4 272 47.4
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 9.8e-56 221.9 210 51.9
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 1.6e-53 214.5 213 53.1
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 6.2e-50 202.6 263 39.5
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 6.8e-49 199.1 208 50.0
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 1.9e-46 191.0 168 51.2
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 7.6e-40 169.1 323 34.1
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 6.8e-33 146.0 85 76.5
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 6.4e-31 139.4 263 35.7
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.7e-28 131.3 155 47.7
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 4.3e-27 126.7 137 50.4
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 2.6e-24 117.5 76 68.4
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.3e-23 115.2 87 65.5
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 2.9e-15 87.4 177 32.8
Hma1.2p1_0248F.1_g102080 Hydrangea macrophylla HOM05D003443 ORTHO05D009887 2.4e-09 67.8 36 77.8
Zm00001eb081310 Zea mays HOM05D003443 ORTHO05D009887 1.2e-08 65.5 146 32.9
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 1.3e-07 62.0 48 60.4
Lsat_1_v5_gn_1_21640 Lactuca sativa HOM05D001068 ORTHO05D002190 5.5e-06 56.6 38 63.2


User provided reference genes

Program Settings