Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 1.7e-174 615.9 323 100.0
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 1.1e-136 490.3 323 80.8
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 6.3e-132 474.6 321 78.2
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 7.2e-128 461.1 323 76.2
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 7.2e-128 461.1 323 76.2
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 2.9e-121 439.1 320 72.2
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 3.2e-120 435.6 320 71.9
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 9.4e-120 434.1 324 71.0
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 1.6e-119 433.3 322 69.9
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 6.1e-119 431.4 320 71.6
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 7.9e-119 431.0 319 72.4
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 5.1e-118 428.3 323 71.8
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 8.8e-118 427.6 320 70.9
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.6e-117 426.0 320 70.9
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 2.6e-117 426.0 313 70.6
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.3e-117 425.6 324 71.3
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 3.3e-117 425.6 323 71.8
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 7.4e-117 424.5 319 70.5
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 9.7e-117 424.1 321 71.3
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 6.3e-116 421.4 321 70.7
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.4e-115 420.2 320 70.0
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.4e-115 420.2 319 69.9
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.8e-115 419.9 319 69.3
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 6.9e-115 417.9 311 72.7
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 9.1e-115 417.5 318 70.8
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 1.2e-114 417.2 318 70.8
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.5e-114 416.8 320 69.7
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.6e-114 416.0 320 69.4
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 5.9e-114 414.8 335 67.5
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 7.7e-114 414.5 320 69.1
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 1.0e-113 414.1 316 69.0
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 1.0e-113 414.1 318 68.2
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.7e-113 413.3 320 69.1
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 8.5e-113 411.0 320 68.1
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.1e-112 410.6 320 69.7
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 1.4e-112 410.2 319 66.5
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.2e-112 409.1 310 71.3
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 4.2e-112 408.7 319 69.9
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 4.7e-111 405.2 320 67.8
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 7.9e-111 404.4 320 67.2
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 2.3e-110 402.9 320 67.2
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 1.1e-109 400.6 310 68.7
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 1.3e-108 397.1 319 67.4
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.7e-108 396.7 320 66.9
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 3.1e-107 392.5 308 67.2
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 4.1e-107 392.1 375 59.5
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 5.3e-107 391.7 320 66.6
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 5.3e-107 391.7 321 66.0
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 7.0e-107 391.3 320 66.9
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 2.0e-106 389.8 320 66.2
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 2.6e-106 389.4 313 66.8
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 3.5e-106 389.0 328 64.9
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 5.9e-106 388.3 379 56.7
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.0e-105 387.5 321 65.4
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 2.2e-105 386.3 318 65.4
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 6.5e-105 384.8 320 63.4
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 8.5e-105 384.4 312 65.1
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 5.5e-104 381.7 313 63.6
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.1e-103 379.8 322 63.4
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 4.7e-103 378.6 369 58.8
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.8e-102 376.7 335 63.0
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 3.3e-101 372.5 323 65.0
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.3e-100 370.5 322 66.8
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.7e-100 370.2 361 58.4
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 2.8e-100 369.4 322 61.5
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.1e-99 367.5 320 63.4
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 4.1e-99 365.5 299 68.2
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 1.2e-98 364.0 321 63.6
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 5.9e-98 361.7 320 62.8
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 7.7e-98 361.3 322 60.6
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 2.2e-97 359.8 321 61.7
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 2.5e-96 356.3 320 60.3
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.2e-95 354.0 321 59.8
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.7e-95 352.8 362 59.4
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 4.7e-95 352.1 320 62.2
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 3.0e-94 349.4 338 57.7
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 1.5e-93 347.1 319 61.1
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 2.6e-93 346.3 296 63.2
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 3.7e-92 342.4 345 59.1
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 2.4e-91 339.7 320 60.0
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 4.1e-91 339.0 319 59.2
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 2.0e-90 336.7 321 60.7
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 3.5e-90 335.9 320 58.4
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 1.0e-89 334.3 320 59.7
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.3e-89 334.0 329 59.3
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 8.6e-89 331.3 320 58.1
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 8.6e-89 331.3 321 58.3
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.9e-88 330.1 314 56.1
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 7.2e-88 328.2 306 59.5
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 7.2e-88 328.2 256 69.1
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 9.5e-88 327.8 320 59.4
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.2e-87 327.4 324 57.7
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.2e-87 327.4 265 65.7
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 2.1e-87 326.6 320 59.1
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.0e-86 324.3 320 58.8
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.0e-86 324.3 320 58.8
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.0e-86 324.3 320 58.8
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.4e-86 323.9 321 58.3
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.4e-86 323.9 306 61.4
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 4.0e-86 322.4 323 58.5
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.2e-85 320.9 323 58.8
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.2e-85 320.9 323 58.8
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 1.5e-85 320.5 323 57.3
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.3e-84 317.4 320 57.2
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 2.8e-84 316.2 320 56.6
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 3.1e-83 312.8 320 57.2
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 7.3e-80 301.6 314 56.1
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 3.6e-79 299.3 316 55.4
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.2e-77 294.3 265 60.8
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 8.3e-76 288.1 206 74.3
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 7.3e-72 275.0 320 51.2
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 1.4e-70 270.8 323 50.8
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 8.3e-68 261.5 308 52.3
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 7.8e-66 255.0 312 48.4
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 1.5e-64 250.8 271 52.4
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 3.3e-64 249.6 308 49.0
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.4e-53 213.0 275 51.3
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 7.1e-51 205.3 321 42.4
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 6.0e-50 202.2 336 40.2
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 1.3e-44 184.5 110 87.3
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 9.3e-43 178.3 110 81.8
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 1.1e-40 171.4 185 48.1
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 4.0e-38 162.9 199 50.8
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 5.3e-38 162.5 178 53.9
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 1.5e-37 161.0 136 65.4
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.9e-36 156.8 105 76.2
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 1.6e-26 124.4 247 38.1
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 6.7e-25 119.0 93 68.8
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.1e-22 111.7 337 31.8
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 1.2e-18 98.2 106 52.8
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.7e-18 97.1 98 53.1
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 6.0e-18 95.9 108 47.2
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.1e-16 91.7 134 44.0
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 2.4e-14 84.0 46 91.3
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 2.4e-14 84.0 46 91.3
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 2.4e-14 84.0 46 91.3
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 4.1e-14 83.2 70 62.9
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 1.2e-13 81.6 54 75.9
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 2.0e-13 80.9 67 62.7
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 3.4e-13 80.1 45 88.9
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.0e-12 78.6 82 57.3
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 8.5e-12 75.5 53 71.7
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 7.2e-11 72.4 83 45.8
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 6.7e-09 65.9 51 70.6
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 8.8e-09 65.5 36 86.1
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 2.8e-07 60.5 50 56.0


User provided reference genes

Program Settings