Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.8e-162 575.9 295 100.0
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.7e-89 332.8 220 77.7
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 2.6e-84 316.2 217 76.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 7.6e-84 314.7 216 74.5
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.2e-83 313.2 216 75.0
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.2e-82 309.3 216 74.1
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.1e-82 308.1 216 74.1
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 4.6e-81 305.4 216 72.7
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 3.8e-67 259.2 213 66.7
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.9e-66 256.9 213 65.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 3.0e-64 249.6 212 64.2
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 6.2e-62 241.9 210 61.0
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.4e-61 240.7 205 62.0
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 4.0e-61 239.2 208 61.5
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.5e-60 237.3 216 63.4
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 2.0e-60 236.9 212 62.3
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 2.6e-60 236.5 225 60.4
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 4.5e-60 235.7 214 61.2
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.5e-60 235.7 224 58.5
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.3e-59 234.2 212 60.4
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 4.9e-59 232.3 213 58.2
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 3.2e-58 229.6 207 58.5
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.6e-57 227.3 226 59.3
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.6e-57 227.3 241 53.5
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.6e-57 227.3 221 62.0
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.8e-56 223.8 253 51.4
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.8e-56 223.8 207 59.4
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 3.0e-56 223.0 226 58.8
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 3.9e-56 222.6 196 62.2
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 6.7e-56 221.9 222 58.1
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 3.3e-55 219.5 208 59.6
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 5.6e-55 218.8 231 55.8
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.3e-54 217.6 246 53.7
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.4e-53 214.2 210 55.2
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.8e-53 213.8 215 56.3
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.4e-53 213.4 229 55.0
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.1e-53 213.0 217 58.1
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.0e-53 211.5 214 59.3
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.0e-53 211.5 214 59.3
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 2.0e-52 210.3 210 57.6
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.0e-52 210.3 217 57.6
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.4e-52 209.5 249 53.4
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.7e-51 207.2 183 61.7
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.9e-51 206.5 217 56.7
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.9e-51 206.5 209 50.7
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.5e-51 205.3 214 58.9
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.2e-50 203.0 218 53.2
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 4.2e-50 202.6 226 55.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 7.1e-50 201.8 211 52.6
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.2e-49 201.1 212 53.3
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 2.7e-49 199.9 211 54.5
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 3.5e-49 199.5 211 52.1
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.9e-49 198.4 218 51.4
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 7.9e-49 198.4 213 52.1
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 6.7e-48 195.3 218 53.2
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-47 194.5 218 50.5
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.5e-47 194.1 230 50.9
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.5e-47 193.4 217 53.0
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 7.4e-47 191.8 237 48.1
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 9.7e-47 191.4 254 47.6
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 2.2e-46 190.3 154 64.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.8e-46 189.9 210 48.1
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 8.2e-46 188.3 232 53.0
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.4e-45 187.6 197 54.8
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.1e-45 186.4 217 53.0
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 4.1e-45 186.0 212 51.4
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.5e-44 184.1 209 49.3
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 3.4e-44 183.0 222 49.5
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.0e-43 181.4 208 47.1
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.9e-43 179.9 215 49.3
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 3.8e-43 179.5 234 46.6
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.0e-43 179.1 222 48.2
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.2e-42 176.4 216 50.9
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.4e-42 174.9 217 52.1
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.2e-41 174.5 229 47.2
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.1e-41 173.7 220 47.7
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.4e-40 171.0 232 46.1
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 5.1e-40 169.1 233 45.5
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.1e-39 167.9 213 51.6
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.5e-39 166.8 201 49.8
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.3e-39 166.0 210 49.0
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 5.7e-39 165.6 196 46.9
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 2.8e-38 163.3 224 45.5
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 4.8e-38 162.5 219 49.8
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.2e-38 161.8 211 46.0
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.8e-37 160.6 223 47.1
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 2.4e-37 160.2 226 50.0
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 2.4e-37 160.2 226 50.0
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.4e-37 160.2 218 45.9
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.1e-37 159.8 190 50.0
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 5.3e-37 159.1 236 47.5
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.0e-36 157.1 217 47.0
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 2.6e-36 156.8 218 45.9
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 4.5e-36 156.0 218 46.3
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 5.9e-36 155.6 218 45.9
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.7e-35 154.1 198 51.0
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.9e-35 153.3 200 45.0
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 3.8e-35 152.9 212 46.7
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 5.0e-35 152.5 220 45.0
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 5.0e-35 152.5 220 45.0
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.9e-34 150.6 224 46.0
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.9e-34 150.6 198 43.9
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.9e-34 150.6 220 44.1
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-33 147.9 217 44.7
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-33 147.9 217 44.7
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.6e-33 147.5 218 47.2
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.6e-33 147.5 211 44.5
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-33 147.5 226 44.2
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-33 147.5 226 44.2
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.6e-33 147.5 226 44.2
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 2.1e-33 147.1 246 41.5
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.1e-33 147.1 204 44.1
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-33 146.7 207 46.9
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 4.7e-33 146.0 213 44.6
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.4e-32 144.4 199 43.7
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 3.0e-32 143.3 221 44.3
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 3.9e-32 142.9 221 43.9
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 6.7e-32 142.1 215 43.3
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 6.7e-32 142.1 215 43.3
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 6.7e-32 142.1 229 42.8
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 6.7e-32 142.1 215 43.3
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 8.8e-32 141.7 201 48.3
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.5e-31 141.0 206 40.8
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.5e-31 141.0 226 42.9
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 2.0e-31 140.6 215 42.8
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 9.7e-31 138.3 258 42.2
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-29 133.7 219 43.8
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 4.1e-29 132.9 264 37.9
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.2e-28 131.3 204 39.7
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.5e-28 129.4 189 46.0
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.5e-28 129.4 186 45.7
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 7.7e-28 128.6 139 54.0
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.8e-27 126.3 182 42.3
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.1e-25 120.6 206 38.3
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.7e-25 120.2 192 38.0
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.4e-24 117.9 156 46.2
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.8e-24 117.5 194 39.2
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 6.7e-24 115.5 209 37.3
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.7e-24 115.5 220 38.2
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 8.8e-24 115.2 108 57.4
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 2.6e-23 113.6 207 37.7
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.3e-23 113.2 202 38.1
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.7e-23 112.5 190 40.0
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.2e-22 110.5 260 31.5
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.3e-22 109.0 224 36.6
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 2.4e-21 107.1 231 37.2
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.6e-20 104.4 178 39.3
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 1.0e-19 101.7 126 48.4
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.9e-19 100.1 202 34.7
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.1e-18 98.2 90 56.7
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.9e-18 97.4 94 55.3
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 4.2e-18 96.3 168 39.9
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 4.2e-18 96.3 204 32.4
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 5.5e-18 95.9 97 54.6
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-17 94.4 130 49.2
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.6e-17 93.2 172 36.6
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.8e-16 90.9 201 32.3
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.2e-14 84.0 177 33.9
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.2e-14 84.0 177 33.9
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.7e-14 83.2 177 33.9
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.7e-14 83.2 177 33.9
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 4.8e-14 82.8 177 33.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.8e-13 80.9 260 32.3
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 9.1e-13 78.6 98 48.0
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 9.1e-13 78.6 212 28.3
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.3e-11 74.7 186 30.6
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 8.5e-11 72.0 205 28.8
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 4.2e-10 69.7 99 45.5
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 9.4e-10 68.6 181 30.9
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 3.6e-09 66.6 93 41.9
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.4e-08 64.7 124 38.7
RcHm_v2.0_Chr5g0007251 Rosa chinensis HOM05D044691 ORTHO05D004585 8.8e-08 62.0 74 50.0
RcHm_v2.0_Chr5g0081311 Rosa chinensis HOM05D044691 ORTHO05D004585 7.5e-07 58.9 68 52.9
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.8e-06 57.0 185 31.9


User provided reference genes

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