Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G494700 Prunus persica HOM05D006264 ORTHO05D007739 3.6e-227 791.2 383 100.0
MD15G1347000 Malus domestica HOM05D006264 ORTHO05D007739 5.1e-181 637.9 328 93.3
FAN15G0088 Fragaria x ananassa HOM05D006264 ORTHO05D007739 3.8e-176 621.7 329 88.1
FAN20G0424 Fragaria x ananassa HOM05D006264 ORTHO05D007739 3.2e-175 618.6 329 87.8
RcHm_v2.0_Chr6g0295971 Rosa chinensis HOM05D006264 ORTHO05D007739 2.1e-174 615.9 328 87.8
FAN24G2929 Fragaria x ananassa HOM05D006264 ORTHO05D007739 2.3e-173 612.5 331 86.1
Ciclev10001823m.g Citrus clementina HOM05D006264 ORTHO05D007739 6.2e-171 604.4 328 86.3
Thecc.08G126800 Theobroma cacao HOM05D006264 ORTHO05D007739 3.1e-170 602.1 328 85.7
MELO3C010482.2 Cucumis melo HOM05D006264 ORTHO05D007739 7.6e-169 597.4 328 85.1
Glyma.06G115200 Glycine max HOM05D006264 ORTHO05D007739 7.6e-169 597.4 327 84.7
arahy.Tifrunner.gnm1.ann1.YYE7NP Arachis hypogaea HOM05D006264 ORTHO05D007739 1.9e-167 592.8 327 83.2
CsaV3_4G028200 Cucumis sativus L. HOM05D006264 ORTHO05D007739 1.9e-167 592.8 330 83.6
Gohir.D06G045800 Gossypium hirsutum HOM05D006264 ORTHO05D007739 1.9e-167 592.8 317 86.8
Gorai.010G051000 Gossypium raimondii HOM05D006264 ORTHO05D007739 1.9e-167 592.8 317 86.8
Glyma.04G247500 Glycine max HOM05D006264 ORTHO05D007739 2.4e-167 592.4 327 84.4
VMungo1309G2910 Vigna mungo HOM05D006264 ORTHO05D007739 3.2e-167 592.0 326 84.4
arahy.Tifrunner.gnm1.ann1.W8H4W4 Arachis hypogaea HOM05D006264 ORTHO05D007739 9.3e-167 590.5 327 82.9
Sed0004807 Sechium edule HOM05D006264 ORTHO05D007739 2.1e-166 589.3 328 83.8
CANSAT11G2315 Cannabis sativa HOM05D006264 ORTHO05D007739 6.0e-166 587.8 328 84.1
COL.COLO4_04990 Corchorus olitorius HOM05D006264 ORTHO05D007739 7.9e-166 587.4 328 83.8
Phvul.009G127300 Phaseolus vulgaris HOM05D006264 ORTHO05D007739 1.0e-165 587.0 326 83.7
QL09p034323 Quercus lobata HOM05D006264 ORTHO05D007739 1.3e-165 586.6 327 83.2
FvH4_2g27090 Fragaria vesca HOM05D006264 ORTHO05D007739 5.1e-165 584.7 325 83.1
Actinidia29470 Actinidia chinensis HOM05D006264 ORTHO05D007739 6.6e-165 584.3 328 81.7
Medtr3g088580 Medicago truncatula HOM05D006264 ORTHO05D007739 1.9e-164 582.8 326 82.5
Eucgr.F04347 Eucalyptus grandis HOM05D006264 ORTHO05D007739 4.3e-164 581.6 328 83.5
Lj4C628G13 Lonicera japonica HOM05D006264 ORTHO05D007739 7.3e-164 580.9 329 83.3
Lj1g0001411 Lotus japonicus HOM05D006264 ORTHO05D007739 7.3e-164 580.9 326 82.8
Lalb_Chr11g0066051 Lupinus albus HOM05D006264 ORTHO05D007739 7.3e-164 580.9 327 83.2
PGR044G1646 Punica granatum HOM05D006264 ORTHO05D007739 7.3e-164 580.9 329 82.4
Ca_27657_v3 Cicer arietinum L. HOM05D006264 ORTHO05D007739 1.3e-163 580.1 327 82.9
Lalb_Chr08g0241301 Lupinus albus HOM05D006264 ORTHO05D007739 3.6e-163 578.6 328 82.0
Nn1g08814 Nelumbo nucifera HOM05D006264 ORTHO05D007739 1.4e-162 576.6 328 82.0
CSS0035031 Camellia sinensis var. sinensis HOM05D006264 ORTHO05D007739 1.5e-161 573.2 328 80.5
Oeu040415.1 Olea europaea HOM05D006264 ORTHO05D007739 1.5e-161 573.2 328 80.8
TAR381G1225 Trochodendron aralioides HOM05D006264 ORTHO05D007739 4.5e-161 571.6 328 82.0
Dinv27304 Davidia involucrata HOM05D006264 ORTHO05D007739 5.8e-161 571.2 328 82.0
THA.LOC104810199 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 1.7e-160 569.7 329 81.2
TAR625G1219 Trochodendron aralioides HOM05D006264 ORTHO05D007739 8.4e-160 567.4 328 79.9
Aa31LG7G5740 Aethionema arabicum HOM05D006264 ORTHO05D007739 1.1e-159 567.0 330 81.8
MSTRG.1441 Avicennia marina HOM05D006264 ORTHO05D007739 1.4e-159 566.6 328 80.2
CARHR022150 Cardamine hirsuta HOM05D006264 ORTHO05D007739 3.2e-159 565.5 330 81.2
Haze_00430 Corylus avellana HOM05D006264 ORTHO05D007739 3.2e-159 565.5 341 80.6
Sp1g19320 Schrenkiella parvula HOM05D006264 ORTHO05D007739 5.4e-159 564.7 330 80.6
AT1G21760 Arabidopsis thaliana HOM05D006264 ORTHO05D007739 2.7e-158 562.4 330 79.4
CAN.G2.26 Capsicum annuum HOM05D006264 ORTHO05D007739 2.7e-158 562.4 325 79.7
Solyc11g012830.3 Solanum lycopersicum HOM05D006264 ORTHO05D007739 2.7e-158 562.4 328 79.6
CiPaw.05G220800 Carya illinoinensis HOM05D006264 ORTHO05D007739 4.6e-158 561.6 328 81.1
BcaB07g32175 Brassica carinata HOM05D006264 ORTHO05D007739 1.0e-157 560.5 330 80.3
ClCG11G015780 Citrullus lanatus HOM05D006264 ORTHO05D007739 1.0e-157 560.5 308 84.1
Cc10_g12020 Coffea canephora HOM05D006264 ORTHO05D007739 1.0e-157 560.5 328 77.7
TPR.G13464 Trifolium pratense HOM05D006264 ORTHO05D007739 1.0e-157 560.5 327 80.1
PGSC0003DMG400000884 Solanum tuberosum HOM05D006264 ORTHO05D007739 1.3e-157 560.1 328 79.3
TWI60G1034 Tripterygium wilfordii HOM05D006264 ORTHO05D007739 1.3e-157 560.1 329 80.2
arahy.Tifrunner.gnm1.ann1.9W7Z3M Arachis hypogaea HOM05D006264 ORTHO05D007739 5.1e-157 558.1 335 77.9
Sc02g0005000 Simmondsia chinensis HOM05D006264 ORTHO05D007739 6.7e-157 557.8 328 78.7
BcaC05g26098 Brassica carinata HOM05D006264 ORTHO05D007739 1.9e-156 556.2 330 80.0
Hund17298 Selenicereus undatus HOM05D006264 ORTHO05D007739 1.9e-156 556.2 326 79.8
Nitab4.5_0001996g0020 Nicotiana tabacum HOM05D006264 ORTHO05D007739 4.3e-156 555.1 325 77.8
A06p17870 Brassica napus HOM05D006264 ORTHO05D007739 2.1e-155 552.7 346 76.9
Carub.0001s2122 Capsella rubella HOM05D006264 ORTHO05D007739 3.7e-155 552.0 330 78.8
BraA06t24877Z Brassica rapa HOM05D006264 ORTHO05D007739 6.2e-155 551.2 341 77.1
BolC5t30776H Brassica oleracea HOM05D006264 ORTHO05D007739 4.0e-154 548.5 338 77.5
HanXRQChr05g0151071 Helianthus annuus HOM05D006264 ORTHO05D007739 2.6e-153 545.8 328 75.6
Rhsim11G0069200 Rhododendron simsii HOM05D006264 ORTHO05D007739 5.8e-153 544.7 331 76.7
Duzib093G0816 Durio zibethinus HOM05D006264 ORTHO05D007739 4.9e-152 541.6 328 79.0
EL10Ac1g01023 Beta vulgaris HOM05D006264 ORTHO05D007739 6.5e-152 541.2 328 77.7
vmacro00839 Vaccinium macrocarpon HOM05D006264 ORTHO05D007739 1.1e-151 540.4 328 76.8
Migut.C01127 Erythranthe guttata HOM05D006264 ORTHO05D007739 7.9e-150 534.3 328 76.5
Manes.02G164400 Manihot esculenta HOM05D006264 ORTHO05D007739 1.0e-149 533.9 328 75.3
AUR62019071 Chenopodium quinoa HOM05D006264 ORTHO05D007739 3.0e-149 532.3 328 75.6
Aqoxy6G00234 Aquilegia oxysepala HOM05D006264 ORTHO05D007739 5.1e-149 531.6 318 77.4
AUR62014328 Chenopodium quinoa HOM05D006264 ORTHO05D007739 6.7e-149 531.2 328 75.3
C05p20770 Brassica napus HOM05D006264 ORTHO05D007739 2.5e-148 529.3 313 78.9
MBI16_g07653_MAGBIO Magnolia biondii HOM05D006264 ORTHO05D007739 3.3e-148 528.9 340 72.4
SGA_v2.0_scaffold24G10459 Striga asiatica HOM05D006264 ORTHO05D007739 1.6e-147 526.6 328 75.9
Peaxi162Scf00914g00315 Petunia axillaris HOM05D006264 ORTHO05D007739 8.2e-147 524.2 297 80.5
Potri.005G178600 Populus trichocarpa HOM05D006264 ORTHO05D007739 3.2e-143 512.3 328 74.4
Potri.002G082500 Populus trichocarpa HOM05D006264 ORTHO05D007739 1.6e-142 510.0 328 72.9
Lsat_1_v5_gn_6_112861 Lactuca sativa HOM05D006264 ORTHO05D007739 3.5e-142 508.8 328 72.3
PSO170G1538 Papaver somniferum HOM05D006264 ORTHO05D007739 6.1e-142 508.1 328 71.6
PSO528G0109 Papaver somniferum HOM05D006264 ORTHO05D007739 6.7e-141 504.6 328 71.0
CDE02G1850 Ceratophyllum demersum HOM05D006264 ORTHO05D007739 1.9e-140 503.1 328 69.2
PSO063G0125 Papaver somniferum HOM05D006264 ORTHO05D007739 4.3e-140 501.9 328 70.7
ATR0584G291 Amborella trichopoda HOM05D006264 ORTHO05D007739 1.6e-139 500.0 315 72.7
Nitab4.5_0001803g0010 Nicotiana tabacum HOM05D006264 ORTHO05D007739 1.6e-139 500.0 313 75.1
GSVIVG01008855001 Vitis vinifera HOM05D006264 ORTHO05D007739 1.4e-133 480.3 328 71.3
QL09p034368 Quercus lobata HOM05D006264 ORTHO05D007739 6.9e-130 468.0 253 84.6
HPP92_004401 Vanilla planifolia HOM05D006264 ORTHO05D007739 4.5e-129 465.3 325 66.5
HPP92_027807 Vanilla planifolia HOM05D006264 ORTHO05D007739 7.7e-129 464.5 325 66.2
THA.LOC104801868 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 1.6e-126 456.8 255 82.7
Thhalv10008543m.g Eutrema salsugineum HOM05D006264 ORTHO05D007739 2.3e-125 453.0 256 82.4
AL1G34960 Arabidopsis lyrata HOM05D006264 ORTHO05D007739 6.7e-125 451.4 254 82.3
Pp3c3_38060 Physcomitrium patens HOM05D006264 ORTHO05D007739 1.3e-123 447.2 306 69.0
SMO347G0097 Selaginella moellendorffii HOM05D006264 ORTHO05D007739 1.8e-122 443.4 307 65.8
Sabra02G0064700 Salix brachista HOM05D006264 ORTHO05D007739 7.7e-121 438.0 328 65.2
unitig_748.g7689 Utricularia gibba HOM05D006264 ORTHO05D007739 2.2e-120 436.4 317 65.6
Zm00001eb422580 Zea mays HOM05D006264 ORTHO05D007739 7.2e-119 431.4 330 60.9
ECA246G2185 Erigeron canadensis HOM05D006264 ORTHO05D007739 2.1e-118 429.9 277 72.9
Gohir.A06G045300 Gossypium hirsutum HOM05D006264 ORTHO05D007739 2.0e-116 423.3 241 80.1
DCAR_028205 Daucus carota HOM05D006264 ORTHO05D007739 5.7e-116 421.8 254 78.0
Mapoly0151s0012 Marchantia polymorpha HOM05D006264 ORTHO05D007739 9.1e-114 414.5 317 60.6
AagrBONN_evm.TU.Sc2ySwM_117.473 Anthoceros agrestis HOM05D006264 ORTHO05D007739 8.5e-112 407.9 306 61.1
Atru.chr13.1491 Acer truncatum HOM05D006264 ORTHO05D007739 3.7e-107 392.5 220 85.5
Sopen11g007570 Solanum pennellii HOM05D006264 ORTHO05D007739 6.3e-99 365.2 198 86.9
CBR_g39544 Chara braunii HOM05D006264 ORTHO05D007739 4.9e-91 339.0 312 53.8
Psat5g086280 Pisum sativum HOM05D006264 ORTHO05D007739 5.0e-80 302.4 166 78.9
Cpa.g.c35582 Carica papaya HOM05D006264 ORTHO05D007739 1.3e-64 251.1 144 84.7
Psat5g086240 Pisum sativum HOM05D006264 ORTHO05D007739 1.2e-60 238.0 132 86.4
PRCOL_00004228 Prasinoderma coloniale HOM05D006264 ORTHO05D007739 4.6e-49 199.5 311 38.3
Cpa.g.sc418.8 Carica papaya HOM05D006264 ORTHO05D007739 2.5e-47 193.7 115 76.5
MCO07G330 Micromonas commoda HOM05D006264 ORTHO05D007739 2.5e-47 193.7 313 38.7
Os04g0431200 Oryza sativa ssp. japonica HOM05D006264 ORTHO05D007739 3.1e-45 186.8 144 57.6
Cre06.g254450 Chlamydomonas reinhardtii HOM05D006264 ORTHO05D007739 9.3e-42 175.3 305 35.4
SEGI_39749 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 4.6e-33 146.4 111 70.3
arahy.Tifrunner.gnm1.ann1.XAL0CN Arachis hypogaea HOM05D003584 ORTHO05D004148 3.3e-31 140.2 109 56.0
Cpa.g.c45459 Carica papaya HOM05D006264 ORTHO05D007739 9.6e-31 138.7 78 88.5
Medtr4g068980 Medicago truncatula HOM05D006264 ORTHO05D007739 2.1e-30 137.5 82 73.2
Zm00001eb082740 Zea mays HOM05D006264 ORTHO05D007739 1.0e-27 128.6 133 51.9
SEGI_38549 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 1.8e-24 117.9 68 70.6
Atru.chr13.1492 Acer truncatum HOM05D006264 ORTHO05D007739 1.9e-23 114.4 72 73.6
Migut.B01582 Erythranthe guttata HOM05D006264 ORTHO05D007739 3.4e-20 103.6 58 79.3
PGSC0003DMG400006698 Solanum tuberosum HOM05D006264 ORTHO05D007739 1.2e-12 78.6 73 50.7
Rhsim11G0069000 Rhododendron simsii HOM05D006264 ORTHO05D007739 5.0e-11 73.2 62 61.3
Actinidia03465 Actinidia chinensis HOM05D006264 ORTHO05D007739 6.1e-09 66.2 36 77.8
Rhsim11G0068700 Rhododendron simsii HOM05D006264 ORTHO05D007739 4.4e-07 60.1 39 76.9
SEGI_08627 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 3.7e-06 57.0 40 60.0


User provided reference genes

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