Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G490500 Prunus persica HOM05D001090 ORTHO05D008663 0.0e+00 1691.0 860 100.0
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 0.0e+00 1105.5 840 69.0
FvH4_2g27740 Fragaria vesca HOM05D001090 ORTHO05D008663 0.0e+00 1105.1 836 69.0
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 0.0e+00 1098.2 839 68.7
RcHm_v2.0_Chr6g0296591 Rosa chinensis HOM05D001090 ORTHO05D008663 0.0e+00 1095.9 837 68.5
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 0.0e+00 1090.9 850 67.8
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 0.0e+00 1090.1 837 68.7
Cfa018121 Carpinus fangiana HOM05D001090 ORTHO05D008663 6.1e-283 977.6 852 60.3
CANSAT56G3793 Cannabis sativa HOM05D001090 ORTHO05D008663 1.7e-264 916.4 833 56.4
CiPaw.15G032400 Carya illinoinensis HOM05D001090 ORTHO05D008663 9.1e-263 910.6 840 56.5
Dinv14668 Davidia involucrata HOM05D001090 ORTHO05D008663 1.3e-261 906.7 856 55.8
QL09p032725 Quercus lobata HOM05D001090 ORTHO05D008663 3.0e-258 895.6 842 56.5
Ciclev10000294m.g Citrus clementina HOM05D001090 ORTHO05D008663 2.1e-251 872.8 842 55.1
Thecc.08G132300 Theobroma cacao HOM05D001090 ORTHO05D008663 7.5e-241 837.8 847 53.6
CSS0021561 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 6.3e-240 834.7 858 53.5
TWI34G0871 Tripterygium wilfordii HOM05D001090 ORTHO05D008663 1.7e-237 826.6 853 52.6
Atru.chr13.1551 Acer truncatum HOM05D001090 ORTHO05D008663 2.9e-237 825.9 841 51.5
Glyma.06G116800 Glycine max HOM05D001090 ORTHO05D008663 6.8e-234 814.7 852 51.8
Potri.019G066500 Populus trichocarpa HOM05D001090 ORTHO05D008663 2.6e-233 812.8 858 53.1
Actinidia29485 Actinidia chinensis HOM05D001090 ORTHO05D008663 9.8e-233 810.8 856 52.2
Lalb_Chr08g0241151 Lupinus albus HOM05D001090 ORTHO05D008663 8.3e-232 807.7 846 52.4
Duzib041G0130 Durio zibethinus HOM05D001090 ORTHO05D008663 1.1e-231 807.4 851 51.8
Hma1.2p1_1129F.1_g259860 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 1.1e-231 807.4 853 51.9
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 1.8e-231 806.6 856 51.9
Gorai.005G088100 Gossypium raimondii HOM05D001090 ORTHO05D008663 1.2e-230 803.9 853 51.9
Lj1g0016545 Lotus japonicus HOM05D001090 ORTHO05D008663 7.8e-230 801.2 850 51.6
Nn1g08979 Nelumbo nucifera HOM05D001090 ORTHO05D008663 2.3e-229 799.7 866 50.7
MELO3C002690.2 Cucumis melo HOM05D001090 ORTHO05D008663 1.6e-227 793.5 845 50.8
Sabra19G0078400 Salix brachista HOM05D001090 ORTHO05D008663 2.8e-227 792.7 851 51.9
VMungo1309G2387 Vigna mungo HOM05D001090 ORTHO05D008663 3.1e-226 789.3 844 50.7
arahy.Tifrunner.gnm1.ann1.NR7S6L Arachis hypogaea HOM05D001090 ORTHO05D008663 9.8e-225 784.3 848 52.0
CsaV3_1G032930 Cucumis sativus L. HOM05D001090 ORTHO05D008663 1.3e-224 783.9 845 50.3
Manes.18G082000 Manihot esculenta HOM05D001090 ORTHO05D008663 6.4e-224 781.6 853 51.8
Rhsim11G0070600 Rhododendron simsii HOM05D001090 ORTHO05D008663 6.4e-224 781.6 859 50.3
Phvul.009G129300 Phaseolus vulgaris HOM05D001090 ORTHO05D008663 1.4e-223 780.4 842 50.4
arahy.Tifrunner.gnm1.ann1.FIZF7Q Arachis hypogaea HOM05D001090 ORTHO05D008663 1.6e-222 776.9 847 51.2
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 4.3e-220 768.8 856 51.3
COL.COLO4_05689 Corchorus olitorius HOM05D001090 ORTHO05D008663 9.2e-215 751.1 861 48.7
Gohir.D02G078900 Gossypium hirsutum HOM05D001090 ORTHO05D008663 6.0e-214 748.4 807 51.9
Gohir.A02G071600 Gossypium hirsutum HOM05D001090 ORTHO05D008663 1.1e-212 744.2 804 52.5
Sc15g0007530 Simmondsia chinensis HOM05D001090 ORTHO05D008663 5.8e-209 731.9 868 47.7
MBI03_g28477_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D008663 4.1e-207 725.7 887 45.4
Cpa.g.sc64.146 Carica papaya HOM05D001090 ORTHO05D008663 9.2e-207 724.5 844 45.7
THA.LOC104813679 Tarenaya hassleriana HOM05D001090 ORTHO05D008663 4.6e-206 722.2 850 46.4
DCAR_018875 Daucus carota HOM05D001090 ORTHO05D008663 2.3e-205 719.9 854 45.1
Aqoxy6G00325 Aquilegia oxysepala HOM05D001090 ORTHO05D008663 1.9e-204 716.8 870 46.6
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 9.6e-204 714.5 849 46.5
EL10Ac7g17319 Beta vulgaris HOM05D001090 ORTHO05D008663 1.2e-203 714.1 865 48.3
PSO017G6856 Papaver somniferum HOM05D001090 ORTHO05D008663 2.8e-203 713.0 907 45.5
BcaB07g32158 Brassica carinata HOM05D001090 ORTHO05D008663 1.1e-202 711.1 850 45.8
A06p17720 Brassica napus HOM05D001090 ORTHO05D008663 1.2e-198 697.6 856 45.3
BraA06t24864Z Brassica rapa HOM05D001090 ORTHO05D008663 2.1e-198 696.8 854 45.1
AL1G34800 Arabidopsis lyrata HOM05D001090 ORTHO05D008663 2.3e-197 693.3 843 44.2
Lj7A347T47 Lonicera japonica HOM05D001090 ORTHO05D008663 8.7e-197 691.4 774 51.2
Hund17320 Selenicereus undatus HOM05D001090 ORTHO05D008663 1.9e-196 690.3 848 46.7
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 4.3e-196 689.1 848 44.7
AT1G21651 Arabidopsis thaliana HOM05D001090 ORTHO05D008663 5.6e-196 688.7 844 44.8
Sopen11g001050 Solanum pennellii HOM05D001090 ORTHO05D008663 1.6e-195 687.2 869 45.6
Solyc11g005030.3 Solanum lycopersicum HOM05D001090 ORTHO05D008663 2.1e-195 686.8 854 45.8
vmacro16445 Vaccinium macrocarpon HOM05D001090 ORTHO05D008663 2.8e-195 686.4 1012 42.2
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 6.2e-195 685.3 853 44.7
GSVIVG01008814001 Vitis vinifera HOM05D001090 ORTHO05D008663 6.2e-195 685.3 725 52.1
Lsat_1_v5_gn_1_9840 Lactuca sativa HOM05D001090 ORTHO05D008663 2.4e-194 683.3 855 44.9
PGSC0003DMG401006052 Solanum tuberosum HOM05D001090 ORTHO05D008663 2.4e-194 683.3 854 46.0
Actinidia03422 Actinidia chinensis HOM05D001090 ORTHO05D008663 1.2e-193 681.0 841 47.4
C05p20620 Brassica napus HOM05D001090 ORTHO05D008663 3.2e-191 672.9 841 45.7
BolC5t30760H Brassica oleracea HOM05D001090 ORTHO05D008663 3.2e-191 672.9 841 45.7
Carub.0001s2108 Capsella rubella HOM05D001090 ORTHO05D008663 2.1e-190 670.2 853 43.6
Sed0003425 Sechium edule HOM05D001090 ORTHO05D008663 1.0e-189 667.9 767 48.9
BcaC05g26082 Brassica carinata HOM05D001090 ORTHO05D008663 3.3e-188 662.9 845 45.1
Nitab4.5_0002045g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 3.2e-183 646.4 857 41.5
Oeu021884.2 Olea europaea HOM05D001090 ORTHO05D008663 7.1e-183 645.2 917 40.2
Peaxi162Scf01003g00015 Petunia axillaris HOM05D001090 ORTHO05D008663 3.5e-182 642.9 860 42.1
MSTRG.25363 Avicennia marina HOM05D001090 ORTHO05D008663 2.5e-180 636.7 868 42.6
PSO170G6226 Papaver somniferum HOM05D001090 ORTHO05D008663 4.3e-180 636.0 889 45.0
Nitab4.5_0001168g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 2.8e-179 633.3 853 40.9
Psat5g085040 Pisum sativum HOM05D001090 ORTHO05D008663 8.2e-179 631.7 832 44.0
Aa31LG7G5630 Aethionema arabicum HOM05D001090 ORTHO05D008663 2.6e-177 626.7 839 43.5
Ah.15g092020 Amaranthus hybridus HOM05D001090 ORTHO05D008663 1.4e-175 620.9 852 43.4
Migut.C01061 Erythranthe guttata HOM05D001090 ORTHO05D008663 7.1e-175 618.6 854 42.0
Eucgr.F03832 Eucalyptus grandis HOM05D001090 ORTHO05D008663 2.0e-169 600.5 760 44.2
ECA238G2411 Erigeron canadensis HOM05D001090 ORTHO05D008663 1.7e-168 597.4 846 41.8
SalBow7G3344 Salvia bowleyana HOM05D001090 ORTHO05D008663 1.3e-165 587.8 856 41.9
SalBow7G3826 Salvia bowleyana HOM05D001090 ORTHO05D008663 1.3e-163 581.3 850 41.8
HanXRQChr02g0041931 Helianthus annuus HOM05D001090 ORTHO05D008663 1.8e-162 577.4 852 42.7
ATR0584G005 Amborella trichopoda HOM05D001090 ORTHO05D008663 3.3e-156 556.6 866 40.4
SGA_v2.0_scaffold24G10429 Striga asiatica HOM05D001090 ORTHO05D008663 2.2e-147 527.3 855 37.9
AUR62040524 Chenopodium quinoa HOM05D001090 ORTHO05D008663 2.6e-145 520.4 811 40.0
Sp1g19180 Schrenkiella parvula HOM05D001090 ORTHO05D008663 7.2e-143 512.3 652 43.4
TPR.G13463 Trifolium pratense HOM05D001090 ORTHO05D008663 4.0e-141 506.5 596 47.8
HPP92_013748 Vanilla planifolia HOM05D001090 ORTHO05D008663 2.0e-140 504.2 862 37.4
unitig_0.g2283 Utricularia gibba HOM05D001090 ORTHO05D008663 7.0e-138 495.7 867 36.3
Ca_16603_v3 Cicer arietinum L. HOM05D001090 ORTHO05D008663 2.3e-125 454.1 572 44.9
Hma1.2p1_0014F.1_g010110 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 8.9e-125 452.2 583 44.4
Medtr3g088535 Medicago truncatula HOM05D001090 ORTHO05D008663 9.8e-124 448.7 566 45.4
Cc10_g12630 Coffea canephora HOM05D001090 ORTHO05D008663 2.2e-99 367.9 422 45.0
SHI09188 Sapria himalayana HOM05D001090 ORTHO05D008663 2.1e-97 361.3 599 36.7
Medtr3g088545 Medicago truncatula HOM05D001090 ORTHO05D008663 4.7e-94 350.1 270 64.1
Zm00001eb337940 Zea mays HOM05D001090 ORTHO05D008663 1.2e-89 335.5 695 33.7
Os05g0422300 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D008663 4.4e-84 317.0 703 31.4
SHI09187 Sapria himalayana HOM05D001090 ORTHO05D008663 1.6e-81 308.5 309 55.0
Ca_16604_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 3.9e-80 303.9 241 64.7
CDE02G2378 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 2.5e-79 301.2 297 50.8
SEGI_33865 Sequoiadendron giganteum HOM05D001090 ORTHO05D008663 2.1e-78 298.1 761 30.7
Pp3c14_11620 Physcomitrium patens HOM05D001090 ORTHO05D008663 2.0e-68 265.0 917 28.9
CAN.G342.10 Capsicum annuum HOM05D001090 ORTHO05D008663 2.7e-65 254.6 574 31.5
SMO011G0047 Selaginella moellendorffii HOM05D001090 ORTHO05D008663 6.7e-56 223.4 821 28.1
FvH4_5g25800 Fragaria vesca HOM05D000539 ORTHO05D000592 7.9e-49 199.9 166 57.8
Glyma.10G228500 Glycine max HOM05D001090 ORTHO05D008663 6.7e-48 196.8 253 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1353 Anthoceros agrestis HOM05D001090 ORTHO05D008663 5.1e-40 170.6 282 36.5
Mapoly0020s0076 Marchantia polymorpha HOM05D001090 ORTHO05D008663 4.8e-38 164.1 889 25.0
Dinv40410 Davidia involucrata HOM05D001090 ORTHO05D008663 2.8e-30 138.3 95 65.3
CSS0004473 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.1e-26 126.3 141 48.9
CSS0019679 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.6e-25 122.5 141 48.2
CSS0043152 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 4.1e-13 81.3 141 38.3
CSS0030841 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.3e-11 76.3 138 36.2
CDE08G1173 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 3.8e-11 74.7 139 31.7
FvH4_2g22640 Fragaria vesca HOM05D001090 ORTHO05D008663 5.0e-11 74.3 120 41.7
Lsat_1_v5_gn_3_23020 Lactuca sativa HOM05D001090 ORTHO05D008663 1.5e-10 72.8 54 57.4
SEGI_29052 Sequoiadendron giganteum HOM05D001090 ORTHO05D008663 1.0e-08 66.6 85 36.5
DCAR_007110 Daucus carota HOM05D000453 ORTHO05D000387 5.2e-08 64.3 151 29.1
HanXRQChr10g0316851 Helianthus annuus HOM05D000066 ORTHO05D009093 5.2e-08 64.3 50 58.0
vmacro01111 Vaccinium macrocarpon HOM05D000453 ORTHO05D000387 5.2e-08 64.3 133 28.6
Phvul.002G252700 Phaseolus vulgaris HOM05D000453 ORTHO05D000387 6.8e-08 63.9 132 28.8
VMungo0251G1177 Vigna mungo HOM05D000453 ORTHO05D000387 6.8e-08 63.9 132 28.0
Dinv14749 Davidia involucrata HOM05D000453 ORTHO05D000387 8.9e-08 63.5 139 29.5
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 8.9e-08 63.5 326 25.5
Solyc03g111780.1 Solanum lycopersicum HOM05D000453 ORTHO05D000387 8.9e-08 63.5 152 24.3
TPR.G6274 Trifolium pratense HOM05D000453 ORTHO05D000387 1.5e-07 62.8 143 25.9
Glyma.08G130300 Glycine max HOM05D000453 ORTHO05D000387 2.0e-07 62.4 143 25.9
Gorai.002G188800 Gossypium raimondii HOM05D000453 ORTHO05D000387 2.0e-07 62.4 144 27.8
CBR_g8279 Chara braunii HOM05D001090 ORTHO05D008663 2.6e-07 62.0 74 39.2
Dinv40409 Davidia involucrata HOM05D001090 ORTHO05D008663 2.6e-07 62.0 74 40.5
ECA232G4971 Erigeron canadensis HOM05D000453 ORTHO05D000387 2.6e-07 62.0 125 28.0
THA.LOC104825546 Tarenaya hassleriana HOM05D000453 ORTHO05D000387 2.6e-07 62.0 144 23.6
Lj5P133T72 Lonicera japonica HOM05D000453 ORTHO05D000387 4.4e-07 61.2 152 27.6
Manes.05G092700 Manihot esculenta HOM05D000453 ORTHO05D000387 4.4e-07 61.2 215 34.4
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 5.7e-07 60.8 142 23.2
Phvul.009G182000 Phaseolus vulgaris HOM05D000453 ORTHO05D000387 5.7e-07 60.8 147 29.9
CsaV3_1G000890 Cucumis sativus L. HOM05D000453 ORTHO05D000387 7.5e-07 60.5 213 26.8
HanXRQChr09g0271831 Helianthus annuus HOM05D000453 ORTHO05D000387 7.5e-07 60.5 148 29.1
TWI36G1770 Tripterygium wilfordii HOM05D000453 ORTHO05D000387 7.5e-07 60.5 151 26.5
unitig_46.g18501 Utricularia gibba HOM05D005428 ORTHO05D006876 9.8e-07 60.1 304 27.6
unitig_47.g30761 Utricularia gibba HOM05D000453 ORTHO05D006876 9.8e-07 60.1 304 27.6
AUR62024219 Chenopodium quinoa HOM05D000453 ORTHO05D000387 1.3e-06 59.7 137 25.5
MD07G1027800 Malus domestica HOM05D000453 ORTHO05D000387 1.3e-06 59.7 133 31.6
RcHm_v2.0_Chr4g0432531 Rosa chinensis HOM05D000453 ORTHO05D000387 1.3e-06 59.7 132 26.5
CDE07G0736 Ceratophyllum demersum HOM05D000453 ORTHO05D000387 1.7e-06 59.3 283 28.6
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 1.7e-06 59.3 430 23.3
Phvul.003G207000 Phaseolus vulgaris HOM05D000453 ORTHO05D000387 1.7e-06 59.3 152 28.3
Potri.010G050900 Populus trichocarpa HOM05D000453 ORTHO05D000387 1.7e-06 59.3 146 26.7
CDE04G2924 Ceratophyllum demersum HOM05D000020 ORTHO05D000387 2.2e-06 58.9 300 28.7
Ciclev10031507m.g Citrus clementina HOM05D000453 ORTHO05D000387 2.2e-06 58.9 208 24.5
Cc07_g05440 Coffea canephora HOM05D000453 ORTHO05D000387 2.2e-06 58.9 160 28.1
COL.COLO4_23512 Corchorus olitorius HOM05D000453 ORTHO05D000387 2.2e-06 58.9 132 25.8
Lj4g0008572 Lotus japonicus HOM05D000453 ORTHO05D000387 2.2e-06 58.9 144 27.1
PGSC0003DMG400016973 Solanum tuberosum HOM05D000453 ORTHO05D000387 2.2e-06 58.9 140 26.4
FAN17G1592 Fragaria x ananassa HOM05D000453 ORTHO05D000387 2.8e-06 58.5 151 29.8
Gohir.D01G152500 Gossypium hirsutum HOM05D000453 ORTHO05D000387 2.8e-06 58.5 144 27.8
Oeu027347.1 Olea europaea HOM05D000453 ORTHO05D000387 2.8e-06 58.5 86 33.7
Duzib248G0831 Durio zibethinus HOM05D000453 ORTHO05D000387 3.7e-06 58.2 144 26.4
Manes.12G020000 Manihot esculenta HOM05D000453 ORTHO05D000387 3.7e-06 58.2 131 26.0
Medtr8g089650 Medicago truncatula HOM05D000453 ORTHO05D000387 3.7e-06 58.2 143 23.8
Oeu004664.1 Olea europaea HOM05D000453 ORTHO05D000387 3.7e-06 58.2 140 25.7
Rhsim12G0038800 Rhododendron simsii HOM05D000453 ORTHO05D000387 3.7e-06 58.2 152 25.7
Duzib251G0110 Durio zibethinus HOM05D000453 ORTHO05D000387 4.9e-06 57.8 144 27.1
RcHm_v2.0_Chr4g0444751 Rosa chinensis HOM05D000453 ORTHO05D000387 4.9e-06 57.8 150 28.7
AUR62039424 Chenopodium quinoa HOM05D000453 ORTHO05D000387 6.3e-06 57.4 219 31.1
Pp3c14_3010 Physcomitrium patens HOM05D001090 ORTHO05D008663 6.3e-06 57.4 78 37.2
Carub.0008s1013 Capsella rubella HOM05D000453 ORTHO05D000387 8.3e-06 57.0 156 29.5
CiPaw.05G145700 Carya illinoinensis HOM05D000453 ORTHO05D000387 8.3e-06 57.0 143 27.3
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 8.3e-06 57.0 420 23.8
Oeu028547.1 Olea europaea HOM05D000453 ORTHO05D000387 8.3e-06 57.0 220 30.5
TWI60G1348 Tripterygium wilfordii HOM05D000453 ORTHO05D000387 8.3e-06 57.0 148 29.7


User provided reference genes

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