Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G483400 Prunus persica HOM05D005830 ORTHO05D007212 6.4e-208 727.2 388 100.0
MD15G1128100 Malus domestica HOM05D005830 ORTHO05D007212 2.7e-153 545.8 389 77.1
RcHm_v2.0_Chr6g0297551 Rosa chinensis HOM05D005830 ORTHO05D007212 5.4e-138 495.0 387 69.5
FAN27G1157 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.2e-129 467.2 377 65.5
FAN15G2262 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.7e-129 466.1 382 64.7
FAN20G1042 Fragaria x ananassa HOM05D005830 ORTHO05D007212 6.0e-129 464.9 382 64.9
FAN24G0474 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.3e-128 463.0 382 64.7
FvH4_2g28800 Fragaria vesca HOM05D005830 ORTHO05D007212 1.5e-127 460.3 382 64.1
QL02p021141 Quercus lobata HOM05D005830 ORTHO05D007212 1.4e-109 400.6 401 57.4
CiPaw.08G009900 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.8e-109 400.2 394 58.4
Cfa013122 Carpinus fangiana HOM05D005830 ORTHO05D007212 4.9e-107 392.1 385 56.9
CiPaw.07G225200 Carya illinoinensis HOM05D005830 ORTHO05D007212 2.1e-105 386.7 389 55.3
Gorai.009G059500 Gossypium raimondii HOM05D005830 ORTHO05D007212 2.3e-104 383.3 396 56.1
Gohir.D05G058400 Gossypium hirsutum HOM05D005830 ORTHO05D007212 5.1e-104 382.1 396 55.8
TAR636G3280 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.3e-99 367.5 404 51.5
TAR625G0228 Trochodendron aralioides HOM05D005830 ORTHO05D007212 7.1e-98 361.7 396 52.5
Thecc.09G021700 Theobroma cacao HOM05D005830 ORTHO05D007212 7.8e-97 358.2 407 52.6
Sabra06G0201100 Salix brachista HOM05D005830 ORTHO05D007212 1.1e-95 354.4 400 50.8
COL.COLO4_18887 Corchorus olitorius HOM05D005830 ORTHO05D007212 7.3e-95 351.7 392 52.3
Nn8g39584 Nelumbo nucifera HOM05D005830 ORTHO05D007212 7.3e-95 351.7 396 51.8
Nn2g12145 Nelumbo nucifera HOM05D005830 ORTHO05D007212 9.6e-95 351.3 404 50.7
Potri.006G256900 Populus trichocarpa HOM05D005830 ORTHO05D007212 3.6e-94 349.4 396 51.3
Ciclev10010445m.g Citrus clementina HOM05D005830 ORTHO05D007212 1.1e-93 347.8 388 53.6
ClCG06G011670 Citrullus lanatus HOM05D005830 ORTHO05D007212 2.0e-92 343.6 401 48.1
Aqoxy7G03615 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 3.4e-92 342.8 407 50.4
Dinv05006 Davidia involucrata HOM05D005830 ORTHO05D007212 8.4e-91 338.2 398 50.5
Lalb_Chr11g0063651 Lupinus albus HOM05D005830 ORTHO05D007212 1.4e-90 337.4 386 50.3
Hma1.2p1_0497F.1_g166530 Hydrangea macrophylla HOM05D005830 ORTHO05D007212 7.1e-90 335.1 417 47.7
MELO3C010295.2 Cucumis melo HOM05D005830 ORTHO05D007212 1.6e-89 334.0 397 47.4
CsaV3_1G027980 Cucumis sativus L. HOM05D005830 ORTHO05D007212 1.6e-89 334.0 399 47.1
Lj9A701G52 Lonicera japonica HOM05D005830 ORTHO05D007212 3.5e-89 332.8 390 48.7
Medtr3g106630 Medicago truncatula HOM05D005830 ORTHO05D007212 6.0e-89 332.0 386 49.5
vmacro05164 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 6.0e-89 332.0 396 49.0
TWI63G1326 Tripterygium wilfordii HOM05D005830 ORTHO05D007212 1.3e-88 330.9 393 47.3
Manes.06G045500 Manihot esculenta HOM05D005830 ORTHO05D007212 2.3e-88 330.1 402 46.8
Dinv41459 Davidia involucrata HOM05D005830 ORTHO05D007212 5.1e-88 328.9 396 49.5
Manes.16G124200 Manihot esculenta HOM05D002641 ORTHO05D001537 8.7e-88 328.2 397 49.9
Potri.018G123400 Populus trichocarpa HOM05D005830 ORTHO05D007212 1.5e-87 327.4 393 49.1
Ciclev10008496m.g Citrus clementina HOM05D005830 ORTHO05D007212 1.9e-87 327.0 409 47.7
TPR.G3136 Trifolium pratense HOM05D005830 ORTHO05D007212 3.3e-87 326.2 382 50.0
Rhsim07G0159800 Rhododendron simsii HOM05D005830 ORTHO05D007212 9.6e-87 324.7 398 49.2
Atru.chr7.1975 Acer truncatum HOM05D005830 ORTHO05D007212 2.8e-86 323.2 409 46.7
QL02p090253 Quercus lobata HOM05D005830 ORTHO05D007212 2.8e-86 323.2 416 45.4
CiPaw.04G176400 Carya illinoinensis HOM05D005830 ORTHO05D007212 3.7e-86 322.8 406 47.0
Sed0009357 Sechium edule HOM05D005830 ORTHO05D007212 4.8e-86 322.4 392 46.2
Lj1g0023135 Lotus japonicus HOM05D005830 ORTHO05D007212 6.2e-86 322.0 381 50.9
Dinv36464 Davidia involucrata HOM05D005830 ORTHO05D007212 3.1e-85 319.7 403 46.9
AUR62013287 Chenopodium quinoa HOM05D005830 ORTHO05D007212 5.3e-85 318.9 416 45.4
Cpa.g.sc46.60 Carica papaya HOM05D005830 ORTHO05D007212 1.5e-84 317.4 390 45.6
Gorai.009G015000 Gossypium raimondii HOM05D005830 ORTHO05D007212 2.0e-84 317.0 397 45.8
Prupe.7G250400 Prunus persica HOM05D005830 ORTHO05D007212 2.0e-84 317.0 408 46.6
CiPaw.03G250100 Carya illinoinensis HOM05D005830 ORTHO05D007212 2.6e-84 316.6 407 46.2
GSVIVG01012831001 Vitis vinifera HOM05D005830 ORTHO05D007212 2.6e-84 316.6 390 48.7
Gohir.A05G013800 Gossypium hirsutum HOM05D005830 ORTHO05D007212 4.5e-84 315.8 399 46.6
Eucgr.C02754 Eucalyptus grandis HOM05D005830 ORTHO05D007212 7.6e-84 315.1 391 46.5
Sabra06G0046300 Salix brachista HOM05D005830 ORTHO05D007212 1.3e-83 314.3 393 47.3
Sc08g0006200 Simmondsia chinensis HOM05D005830 ORTHO05D007212 1.7e-83 313.9 395 48.4
vmacro06159 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 1.7e-83 313.9 406 47.3
FvH4_1g02430 Fragaria vesca HOM05D005830 ORTHO05D007212 2.2e-83 313.5 395 47.1
FAN19G1317 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.2e-83 313.5 395 47.1
FAN23G1789 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.2e-83 313.5 395 47.3
FAN28G1643 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.8e-83 312.8 395 46.6
Sabra18G0105100 Salix brachista HOM05D005830 ORTHO05D007212 3.8e-83 312.8 393 47.3
Ca_15753_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 6.4e-83 312.0 384 48.4
MD02G1021100 Malus domestica HOM05D005830 ORTHO05D007212 6.4e-83 312.0 390 48.5
Glyma.04G065400 Glycine max HOM05D005830 ORTHO05D007212 1.4e-82 310.8 382 47.4
Potri.006G063600 Populus trichocarpa HOM05D005830 ORTHO05D007212 1.4e-82 310.8 393 46.6
Ah.09g224370 Amaranthus hybridus HOM05D005830 ORTHO05D007212 2.5e-82 310.1 402 45.5
Gohir.D05G014900 Gossypium hirsutum HOM05D005830 ORTHO05D007212 2.5e-82 310.1 397 45.1
Lsat_1_v5_gn_5_93541 Lactuca sativa HOM05D005830 ORTHO05D007212 5.5e-82 308.9 389 47.6
Duzib150G0784 Durio zibethinus HOM05D005830 ORTHO05D007212 9.3e-82 308.1 394 45.2
Nitab4.5_0002267g0050 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.6e-81 307.4 408 43.6
Cfa002293 Carpinus fangiana HOM05D005830 ORTHO05D007212 3.5e-81 306.2 411 45.3
Psat5g029840 Pisum sativum HOM05D005830 ORTHO05D007212 4.6e-81 305.8 380 47.4
EL10Ac8g18756 Beta vulgaris HOM05D005830 ORTHO05D007212 6.0e-81 305.4 410 44.1
Eucgr.C00582 Eucalyptus grandis HOM05D005830 ORTHO05D007212 6.0e-81 305.4 390 46.9
MBI14_g38128_MAGBIO Magnolia biondii HOM05D005830 ORTHO05D007212 1.0e-80 304.7 402 45.5
MD15G1164200 Malus domestica HOM05D005830 ORTHO05D007212 1.3e-80 304.3 390 47.4
RcHm_v2.0_Chr2g0087391 Rosa chinensis HOM05D005830 ORTHO05D007212 1.5e-79 300.8 401 45.6
Nitab4.5_0000704g0010 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.9e-79 300.4 411 44.8
Manes.14G117500 Manihot esculenta HOM05D005830 ORTHO05D007212 2.5e-79 300.1 390 43.6
CANSAT11G0221 Cannabis sativa HOM05D005830 ORTHO05D007212 3.3e-79 299.7 416 45.9
arahy.Tifrunner.gnm1.ann1.N1L3G9 Arachis hypogaea HOM05D005830 ORTHO05D007212 4.3e-79 299.3 392 45.4
Haze_25480 Corylus avellana HOM05D005830 ORTHO05D007212 2.1e-78 297.0 411 43.8
Peaxi162Scf00088g00106 Petunia axillaris HOM05D005830 ORTHO05D007212 2.4e-77 293.5 415 43.4
Thecc.09G135000 Theobroma cacao HOM05D005830 ORTHO05D007212 2.4e-77 293.5 396 43.9
VMungo1215G0722 Vigna mungo HOM05D005830 ORTHO05D007212 6.9e-77 292.0 387 45.2
VMungo1309G0557 Vigna mungo HOM05D005830 ORTHO05D007212 6.9e-77 292.0 386 46.1
Lalb_Chr13g0301421 Lupinus albus HOM05D005830 ORTHO05D007212 1.0e-75 288.1 401 44.4
Phvul.009G091500 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 1.0e-75 288.1 386 45.1
Phvul.003G170800 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 1.4e-74 284.3 387 45.0
Glyma.17G109300 Glycine max HOM05D005830 ORTHO05D007212 1.9e-74 283.9 388 45.9
DCAR_020892 Daucus carota HOM05D005830 ORTHO05D007212 2.5e-74 283.5 393 44.3
COL.COLO4_15558 Corchorus olitorius HOM05D005830 ORTHO05D007212 3.2e-74 283.1 397 41.8
Ca_21656_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 1.2e-73 281.2 390 43.8
HanXRQChr12g0356861 Helianthus annuus HOM05D005830 ORTHO05D007212 2.3e-72 276.9 397 43.1
Lj4g0000922 Lotus japonicus HOM05D005830 ORTHO05D007212 8.7e-72 275.0 378 45.8
Sc06g0000560 Simmondsia chinensis HOM05D005830 ORTHO05D007212 2.5e-71 273.5 396 43.2
HanXRQChr10g0314411 Helianthus annuus HOM05D005830 ORTHO05D007212 4.3e-71 272.7 393 43.3
MSTRG.10652 Avicennia marina HOM05D005830 ORTHO05D007212 1.1e-69 268.1 407 41.3
TPR.G956 Trifolium pratense HOM05D005830 ORTHO05D007212 6.9e-69 265.4 379 43.5
Actinidia14593 Actinidia chinensis HOM05D000485 ORTHO05D000341 1.2e-68 264.6 343 45.2
CAN.G1382.7 Capsicum annuum HOM05D005830 ORTHO05D007212 1.2e-68 264.6 451 38.4
PGR142G1093 Punica granatum HOM05D005830 ORTHO05D007212 1.3e-67 261.2 373 43.2
Solyc07g007660.1 Solanum lycopersicum HOM05D005830 ORTHO05D007212 1.7e-67 260.8 370 43.0
Sopen07g003650 Solanum pennellii HOM05D005830 ORTHO05D007212 8.5e-67 258.5 370 43.0
Cc06_g07840 Coffea canephora HOM05D005830 ORTHO05D007212 5.5e-66 255.8 425 39.1
PGSC0003DMG400030680 Solanum tuberosum HOM05D005830 ORTHO05D007212 5.1e-64 249.2 377 42.7
Psat4g036280 Pisum sativum HOM05D005830 ORTHO05D007212 1.1e-63 248.1 381 41.7
Aqoxy4G01850 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 1.3e-62 244.6 306 46.4
Medtr4g115690 Medicago truncatula HOM05D005830 ORTHO05D007212 8.2e-62 241.9 351 41.9
Rhsim03G0252000 Rhododendron simsii HOM05D005830 ORTHO05D007212 4.5e-60 236.1 267 52.4
Migut.K00413 Erythranthe guttata HOM05D005830 ORTHO05D007212 1.0e-59 235.0 403 40.0
Oeu052743.1 Olea europaea HOM05D005830 ORTHO05D007212 3.8e-59 233.0 394 38.1
ATR0800G042 Amborella trichopoda HOM05D005830 ORTHO05D007212 1.4e-58 231.1 376 41.2
Ah.16g104630 Amaranthus hybridus HOM05D000524 ORTHO05D000381 7.9e-57 225.3 286 43.4
SalBow1G4219 Salvia bowleyana HOM05D005830 ORTHO05D007212 7.9e-57 225.3 393 37.4
EL10Ac2g04187 Beta vulgaris HOM05D005830 ORTHO05D007212 3.3e-55 219.9 286 45.1
Oeu056965.1 Olea europaea HOM05D005830 ORTHO05D007212 7.4e-55 218.8 355 38.6
unitig_0.g2712 Utricularia gibba HOM05D005830 ORTHO05D007212 4.8e-54 216.1 357 38.9
AUR62011200 Chenopodium quinoa HOM05D005830 ORTHO05D007212 2.4e-53 213.8 345 38.6
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 5.3e-53 212.6 279 45.2
AUR62012424 Chenopodium quinoa HOM05D005830 ORTHO05D007212 5.5e-50 202.6 391 37.1
HPP92_010549 Vanilla planifolia HOM05D005830 ORTHO05D007212 2.9e-43 180.3 374 32.1
Actinidia26367 Actinidia chinensis HOM05D005830 ORTHO05D007212 6.5e-43 179.1 398 35.2
Haze_21491 Corylus avellana HOM05D005830 ORTHO05D007212 3.4e-39 166.8 166 52.4
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 1.4e-37 161.4 321 34.0
SEGI_15152 Sequoiadendron giganteum HOM05D005830 ORTHO05D007212 2.7e-36 157.1 465 30.5
AUR62031547 Chenopodium quinoa HOM05D005830 ORTHO05D007212 5.9e-36 156.0 244 40.2
FAN26G3009 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.7e-35 154.5 168 56.0
Glyma.16G087650 Glycine max HOM05D005830 ORTHO05D007212 7.5e-31 139.0 172 47.1
HPP92_027271 Vanilla planifolia HOM05D005830 ORTHO05D007212 3.8e-27 126.7 170 38.8
Glyma.06G066550 Glycine max HOM05D005830 ORTHO05D007212 1.3e-22 111.7 117 46.2
Medtr4g014150 Medicago truncatula HOM05D005830 ORTHO05D007212 3.9e-19 100.1 271 31.7
QL08p064688 Quercus lobata HOM05D005830 ORTHO05D007212 4.0e-16 90.1 144 38.2
Lj7P437T13 Lonicera japonica HOM05D005830 ORTHO05D007212 1.2e-15 88.6 176 33.5
Glyma.01G070700 Glycine max HOM05D002723 ORTHO05D003240 3.1e-08 63.9 113 31.9


User provided reference genes

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