Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 1.0e-241 839.7 441 100.0
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 5.6e-200 701.0 438 82.0
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 1.2e-199 699.9 451 84.3
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 1.1e-195 686.8 447 81.7
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.2e-189 666.8 441 78.0
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 9.9e-189 663.7 443 78.3
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.2e-187 658.7 442 78.5
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.2e-187 658.3 443 77.4
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.5e-155 552.7 442 67.2
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 5.1e-153 545.0 442 66.7
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 2.0e-152 543.1 446 69.3
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 1.5e-149 533.5 412 68.7
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 5.5e-147 525.0 409 68.9
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 2.1e-146 523.1 416 68.3
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 3.0e-145 519.2 422 68.7
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.3e-143 513.8 406 67.7
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 3.5e-141 505.8 409 66.5
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 1.6e-138 496.9 449 61.9
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.4e-137 493.8 384 67.4
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.8e-137 493.4 415 65.8
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 1.5e-136 490.3 412 65.8
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 1.3e-135 487.3 447 63.3
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 2.8e-135 486.1 339 76.7
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 3.7e-135 485.7 418 65.1
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 6.5e-132 474.9 442 59.5
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 1.0e-129 467.6 415 64.3
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 4.0e-129 465.7 445 60.7
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.8e-126 456.8 408 60.8
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 4.1e-126 455.7 356 67.1
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 9.1e-126 454.5 446 59.4
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 5.9e-125 451.8 443 58.2
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 2.3e-124 449.9 414 58.9
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 6.6e-124 448.4 446 58.5
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 8.6e-124 448.0 482 55.6
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 5.5e-123 445.3 403 59.6
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 9.5e-123 444.5 406 59.9
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 2.1e-122 443.4 403 60.3
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 2.8e-122 443.0 443 59.4
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.8e-122 443.0 402 59.5
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 1.0e-121 441.0 402 59.5
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 4.0e-121 439.1 401 59.9
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 7.5e-120 434.9 402 58.2
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 2.4e-118 429.9 442 56.8
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 5.4e-118 428.7 418 60.3
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.7e-116 423.7 456 54.4
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.1e-115 421.0 307 73.3
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 2.5e-115 419.9 411 58.2
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.8e-113 413.7 410 57.1
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 4.0e-113 412.5 447 55.0
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 4.4e-112 409.1 410 56.3
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 1.4e-110 404.1 410 55.9
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 4.1e-110 402.5 407 56.3
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 2.7e-109 399.8 351 61.8
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.5e-109 399.4 422 56.9
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.2e-106 391.0 406 55.4
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 2.1e-106 390.2 482 49.0
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 3.6e-106 389.4 442 54.8
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 4.7e-106 389.0 381 56.4
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 5.8e-104 382.1 405 53.8
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.3e-103 380.9 444 54.3
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 6.4e-103 378.6 405 53.6
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 3.5e-101 372.9 443 52.4
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 1.7e-100 370.5 419 51.3
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 3.3e-99 366.3 308 64.9
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 3.3e-99 366.3 401 53.4
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 3.3e-99 366.3 434 51.6
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 3.6e-98 362.8 412 51.9
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 4.7e-98 362.5 286 66.1
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 2.4e-94 350.1 423 50.4
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 3.2e-94 349.7 413 51.3
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 3.2e-94 349.7 301 61.5
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 2.3e-92 343.6 409 51.1
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 2.1e-90 337.0 306 61.4
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 6.2e-90 335.5 410 51.2
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 3.4e-88 329.7 359 55.2
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 7.6e-88 328.6 364 54.7
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 5.4e-86 322.4 410 47.3
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.3e-84 317.8 433 46.9
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.5e-83 313.5 290 57.9
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 3.3e-83 313.2 410 48.8
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.1e-81 308.1 334 56.6
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 1.1e-81 308.1 422 47.2
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 1.4e-81 307.8 260 62.7
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.8e-81 307.4 312 56.4
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 6.9e-81 305.4 353 51.8
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.2e-80 304.7 435 45.7
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 7.6e-80 302.0 303 54.5
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 6.6e-76 288.9 371 50.4
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 8.1e-74 282.0 330 52.7
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 3.1e-73 280.0 404 47.5
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 1.3e-71 274.6 383 46.2
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 5.1e-68 262.7 357 46.5
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 5.1e-68 262.7 335 49.3
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 8.7e-68 261.9 355 49.3
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 1.8e-65 254.2 268 55.2
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 3.1e-65 253.4 283 52.7
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 1.0e-63 248.4 321 46.7
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 1.2e-56 224.9 379 43.8
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 1.5e-56 224.6 416 40.9
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 2.5e-54 217.2 412 37.9
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 1.3e-52 211.5 412 39.3
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 1.8e-52 211.1 415 37.8
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 5.1e-52 209.5 414 38.6
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 1.5e-51 208.0 416 38.2
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 9.7e-51 205.3 413 37.8
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 1.3e-50 204.9 412 38.3
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 8.2e-50 202.2 412 37.6
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 1.1e-49 201.8 412 37.6
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 6.9e-49 199.1 350 40.0
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 7.7e-48 195.7 417 36.9
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 1.3e-47 194.9 415 36.6
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.4e-44 184.9 409 37.2
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 3.0e-44 183.7 274 44.9
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 3.0e-44 183.7 409 37.4
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 1.5e-43 181.4 410 37.1
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 7.4e-43 179.1 405 37.0
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 7.4e-43 179.1 280 41.4
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 4.8e-42 176.4 415 36.9
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 3.1e-41 173.7 337 39.8
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 5.3e-41 172.9 194 51.5
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 3.4e-40 170.2 411 33.8
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.8e-36 157.9 331 36.6
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 1.1e-27 128.6 160 50.0
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 7.5e-27 125.9 123 53.7
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 2.2e-26 124.4 302 34.1
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 1.8e-25 121.3 193 43.0
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.2e-21 108.6 372 31.7
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.2e-21 108.6 128 50.8
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 2.3e-20 104.4 175 39.4
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 5.2e-20 103.2 191 38.2
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 2.0e-19 101.3 176 39.2
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 2.0e-19 101.3 98 54.1
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 4.4e-19 100.1 400 30.0
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 6.3e-18 96.3 388 29.6
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 5.4e-17 93.2 376 28.7
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 7.0e-17 92.8 400 28.2
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 2.5e-14 84.3 79 51.9
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 3.1e-09 67.4 63 54.0
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 3.1e-09 67.4 63 54.0
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 7.0e-09 66.2 60 55.0
Dinv07115 Davidia involucrata HOM05D005141 ORTHO05D030953 1.0e-07 62.4 61 63.9
Lj7C714T1 Lonicera japonica HOM05D005141 ORTHO05D030953 1.5e-06 58.5 69 55.1


User provided reference genes

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