Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 1.7e-160 570.5 381 100.0
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 4.7e-94 349.7 316 81.0
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 2.7e-73 280.8 320 71.9
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.2e-70 271.9 318 71.4
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.2e-70 271.9 318 71.1
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 1.9e-63 248.1 318 67.3
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 2.1e-62 244.6 313 66.5
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 4.0e-61 240.4 321 65.4
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 5.6e-55 219.9 317 64.0
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 5.3e-53 213.4 266 72.2
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.9e-50 204.9 244 76.6
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 4.6e-49 200.3 321 61.4
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 3.9e-48 197.2 320 60.3
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 4.3e-47 193.7 320 58.4
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 4.3e-47 193.7 322 61.5
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 1.6e-46 191.8 265 67.5
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 1.7e-43 181.8 311 61.7
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 2.2e-43 181.4 311 58.8
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 6.4e-43 179.9 316 57.6
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 1.1e-42 179.1 295 61.7
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 2.4e-42 177.9 307 57.7
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.2e-41 175.6 316 58.2
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 6.0e-41 173.3 316 58.2
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 7.9e-41 172.9 186 52.2
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 1.5e-39 168.7 314 58.0
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 6.2e-38 163.3 318 57.2
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 8.1e-38 162.9 309 58.3
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 1.4e-37 162.2 322 55.0
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.8e-37 161.8 304 58.9
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 1.8e-37 161.8 309 55.7
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 3.1e-37 161.0 321 54.8
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 4.0e-37 160.6 316 57.3
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 4.9e-35 153.7 319 56.4
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 6.5e-35 153.3 192 80.2
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 1.1e-34 152.5 308 54.2
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 3.5e-33 147.5 304 57.2
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 6.0e-33 146.7 339 49.0
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 3.3e-31 141.0 204 74.5
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 3.3e-31 141.0 322 54.3
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 7.4e-31 139.8 243 58.0
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 7.4e-31 139.8 207 72.5
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 1.3e-30 139.0 304 55.6
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 2.8e-30 137.9 238 66.8
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 3.7e-30 137.5 295 56.6
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 4.8e-30 137.1 320 41.6
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 1.1e-29 136.0 318 50.0
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.4e-29 135.6 305 55.4
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 2.4e-29 134.8 299 52.8
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 2.0e-28 131.7 304 55.6
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 3.4e-28 131.0 321 55.1
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 3.4e-28 131.0 307 56.0
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 1.0e-27 129.4 305 55.1
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 1.7e-27 128.6 328 51.8
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.8e-27 127.5 248 61.3
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 6.5e-27 126.7 309 48.5
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 9.3e-26 122.9 305 53.4
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 9.3e-26 122.9 304 53.0
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 1.6e-25 122.1 309 54.4
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 3.5e-25 120.9 305 53.4
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 1.0e-24 119.4 304 52.0
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 3.0e-24 117.9 306 51.6
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 3.0e-24 117.9 172 41.3
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 5.1e-24 117.1 303 53.1
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 1.9e-23 115.2 307 45.0
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 3.3e-23 114.4 305 53.1
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 4.3e-23 114.0 318 51.3
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 5.7e-23 113.6 329 50.8
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 1.3e-22 112.5 240 60.4
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 8.2e-22 109.8 302 51.7
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 8.2e-22 109.8 324 50.3
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 2.4e-21 108.2 159 37.7
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 3.1e-21 107.8 203 70.0
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 6.9e-21 106.7 324 50.0
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 2.0e-20 105.1 310 51.3
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 3.4e-20 104.4 305 50.5
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 1.3e-19 102.4 128 43.8
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.7e-19 102.1 240 59.2
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 2.9e-19 101.3 310 50.6
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 6.5e-19 100.1 234 58.5
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 1.9e-18 98.6 208 55.3
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 9.4e-18 96.3 125 42.4
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 4.6e-17 94.0 216 63.0
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 6.7e-16 90.1 77 53.2
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 6.7e-16 90.1 320 50.0
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 6.7e-16 90.1 128 39.1
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.1e-15 89.4 218 50.0
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 2.5e-15 88.2 82 52.4
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 2.5e-15 88.2 171 36.8
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 9.7e-15 86.3 213 50.7
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 1.2e-12 79.3 96 43.8
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 2.0e-12 78.6 174 32.2
Cpa.g.sc10.208 Carica papaya HOM05D000880 ORTHO05D009684 3.2e-10 71.2 183 69.9
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 5.7e-07 60.5 121 29.8


User provided reference genes

Program Settings