Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.3e-64 249.6 125 100.0
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 4.5e-38 161.4 133 68.4
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 8.0e-35 150.6 138 63.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 9.8e-33 143.7 128 64.8
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.0e-31 137.5 122 65.6
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.6e-30 136.3 124 62.1
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.6e-30 136.3 124 62.1
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 3.5e-30 135.2 127 60.6
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.0e-26 123.6 124 54.8
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.3e-26 122.5 128 57.8
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.7e-24 116.3 113 60.2
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.9e-23 112.8 117 52.1
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 4.1e-23 111.7 126 54.0
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.0e-23 110.9 126 54.8
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.5e-22 108.6 126 54.0
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.3e-21 105.9 126 50.0
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.9e-21 105.1 131 48.9
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.9e-21 105.1 131 48.9
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.5e-20 103.2 123 48.0
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 4.3e-20 101.7 111 55.9
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.3e-20 101.7 129 46.5
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 9.5e-20 100.5 127 50.4
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.6e-19 99.8 121 49.6
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 6.2e-19 97.8 126 46.8
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 6.2e-19 97.8 116 48.3
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 8.0e-19 97.4 117 47.0
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.1e-18 97.1 118 48.3
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.4e-18 96.7 129 48.1
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.8e-18 96.3 125 48.0
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.3e-18 95.9 125 44.0
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.3e-18 95.9 125 43.2
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.3e-18 95.9 125 44.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.3e-18 95.9 118 48.3
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.0e-18 95.1 128 49.2
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 4.0e-18 95.1 128 46.9
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.0e-18 95.1 118 47.5
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 4.0e-18 95.1 122 46.7
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 4.0e-18 95.1 124 44.4
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 6.8e-18 94.4 118 50.0
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 6.8e-18 94.4 129 48.8
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 6.8e-18 94.4 121 49.6
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.8e-18 94.4 125 46.4
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 8.9e-18 94.0 112 49.1
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 8.9e-18 94.0 132 43.2
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-17 93.6 124 44.4
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.2e-17 93.6 83 57.8
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-17 93.2 115 52.2
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-17 93.2 111 53.2
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.5e-17 93.2 118 45.8
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.5e-17 93.2 123 46.3
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.5e-17 93.2 123 46.3
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 3.4e-17 92.0 123 45.5
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 4.4e-17 91.7 133 45.1
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 4.4e-17 91.7 132 44.7
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.4e-17 91.7 121 48.8
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.8e-17 91.3 115 52.2
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 5.8e-17 91.3 124 48.4
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 9.8e-17 90.5 123 46.3
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 9.8e-17 90.5 120 48.3
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 9.8e-17 90.5 137 43.1
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.3e-16 90.1 128 43.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.3e-16 90.1 120 46.7
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.7e-16 89.7 117 47.0
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.7e-16 89.7 118 44.9
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.7e-16 89.7 131 45.0
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.2e-16 89.4 120 49.2
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 2.2e-16 89.4 121 43.0
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.2e-16 89.4 125 47.2
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 3.7e-16 88.6 140 40.7
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 3.7e-16 88.6 126 44.4
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 3.7e-16 88.6 118 44.1
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 3.7e-16 88.6 121 45.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.9e-16 88.2 118 43.2
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 4.9e-16 88.2 121 43.0
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.9e-16 88.2 120 46.7
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 4.9e-16 88.2 119 46.2
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 6.4e-16 87.8 123 44.7
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 6.4e-16 87.8 125 45.6
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 8.3e-16 87.4 121 43.8
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 8.3e-16 87.4 123 42.3
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.1e-15 87.0 126 44.4
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.1e-15 87.0 126 44.4
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.1e-15 87.0 131 45.8
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.4e-15 86.7 123 42.3
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-15 86.3 120 43.3
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.2e-15 85.5 116 45.7
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 3.2e-15 85.5 121 47.1
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 4.1e-15 85.1 129 43.4
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 4.1e-15 85.1 135 44.4
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 7.0e-15 84.3 113 44.2
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.2e-15 84.0 126 42.9
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 9.2e-15 84.0 121 45.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 9.2e-15 84.0 127 43.3
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 9.2e-15 84.0 134 43.3
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 1.2e-14 83.6 119 44.5
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.6e-14 83.2 120 45.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-14 83.2 126 42.9
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 2.1e-14 82.8 139 41.7
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 2.7e-14 82.4 143 41.3
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 2.7e-14 82.4 116 39.7
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 2.7e-14 82.4 116 39.7
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 2.7e-14 82.4 116 39.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 3.5e-14 82.0 129 41.1
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 4.6e-14 81.6 116 39.7
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 4.6e-14 81.6 116 39.7
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 4.6e-14 81.6 127 40.9
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 6.0e-14 81.3 118 43.2
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 7.8e-14 80.9 122 43.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.3e-13 80.1 119 40.3
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.3e-13 80.1 125 42.4
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.7e-13 79.7 113 41.6
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 2.3e-13 79.3 124 41.9
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.9e-13 78.6 126 41.3
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 5.1e-13 78.2 124 40.3
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 8.6e-13 77.4 114 42.1
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 8.6e-13 77.4 114 42.1
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.1e-12 77.0 115 42.6
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.5e-12 76.6 117 41.0
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.5e-12 76.6 118 39.8
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.9e-12 76.3 126 47.6
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-12 76.3 100 45.0
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 3.3e-12 75.5 124 39.5
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 3.3e-12 75.5 122 41.0
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 4.3e-12 75.1 117 38.5
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.6e-12 74.7 100 46.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 7.3e-12 74.3 118 39.0
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 7.3e-12 74.3 112 44.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 7.3e-12 74.3 120 43.3
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.6e-11 73.2 119 39.5
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.1e-11 72.8 118 40.7
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.8e-11 72.4 120 44.2
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.8e-11 72.4 131 37.4
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.6e-11 72.0 124 37.1
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 3.6e-11 72.0 125 39.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 3.6e-11 72.0 118 38.1
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 8.1e-11 70.9 121 39.7
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.4e-10 70.1 108 41.7
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 2.3e-10 69.3 114 37.7
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.0e-10 68.6 98 44.9
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 5.2e-10 68.2 80 50.0
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 6.8e-10 67.8 140 35.0
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 8.9e-10 67.4 135 34.8
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 8.9e-10 67.4 134 35.8
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.5e-09 66.6 130 36.9
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.5e-09 66.6 126 37.3
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.0e-09 66.2 112 37.5
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 4.4e-09 65.1 124 33.9
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 4.4e-09 65.1 127 33.9
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 5.8e-09 64.7 129 39.5
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.8e-09 64.7 123 36.6
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 7.5e-09 64.3 118 37.3
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.1e-07 60.5 80 43.8
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.1e-07 60.5 80 43.8
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 1.4e-07 60.1 130 37.7
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.2e-07 58.9 87 40.2
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 5.4e-07 58.2 127 36.2
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.2e-06 57.0 114 35.1
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 1.6e-06 56.6 57 52.6
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 1.6e-06 56.6 128 32.8
Atru.chr7.2644 Acer truncatum HOM05D001798 ORTHO05D005040 2.1e-06 56.2 147 33.3
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 2.7e-06 55.8 110 32.7
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 2.7e-06 55.8 109 34.9
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 4.6e-06 55.1 154 29.2
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 7.8e-06 54.3 144 29.9


User provided reference genes

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