Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 7.3e-124 447.2 221 100.0
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 2.9e-80 302.4 225 70.7
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 8.8e-69 264.2 233 63.9
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 1.8e-45 186.8 207 52.2
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 6.8e-45 184.9 207 51.7
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 4.9e-43 178.7 278 42.8
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.4e-42 176.4 276 43.5
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 3.5e-41 172.6 215 49.3
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 5.6e-31 138.7 231 41.6
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 9.5e-31 137.9 233 39.5
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 2.6e-28 129.8 237 38.8
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 2.4e-26 123.2 226 38.5
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.0e-25 120.2 234 39.7
Glyma.04G077700 Glycine max HOM05D027503 ORTHO05D005506 1.5e-23 114.0 158 40.5
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 2.5e-23 113.2 243 36.2
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 5.6e-23 112.1 232 38.4
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 7.3e-23 111.7 216 39.4
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 9.5e-23 111.3 232 36.6
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.2e-22 110.9 237 36.3
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.2e-22 110.9 234 37.6
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.8e-22 109.8 235 36.2
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 3.6e-22 109.4 244 36.1
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.4e-21 107.5 244 34.8
Glyma.06G078900 Glycine max HOM05D027503 ORTHO05D005506 8.9e-21 104.8 178 38.2
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.4e-20 102.8 238 36.1
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.1e-18 97.8 234 35.0
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 5.4e-18 95.5 230 33.9
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 5.4e-18 95.5 235 33.6
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 7.1e-18 95.1 242 34.3
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 9.2e-18 94.7 227 33.5
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.2e-17 94.4 238 34.5
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.6e-17 94.0 232 35.3
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 1.6e-17 94.0 231 34.2
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 2.1e-17 93.6 239 33.5
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 2.7e-17 93.2 235 36.6
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.7e-17 93.2 237 32.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 3.5e-17 92.8 201 35.3
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.5e-17 92.8 237 34.6
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 3.5e-17 92.8 240 32.5
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 3.5e-17 92.8 243 34.6
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 1.0e-16 91.3 237 33.3
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 3.0e-16 89.7 234 35.5
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 3.9e-16 89.4 237 33.8
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 6.6e-16 88.6 232 33.2
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 6.6e-16 88.6 233 33.9
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 6.6e-16 88.6 239 32.6
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 8.6e-16 88.2 235 30.6
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.9e-15 87.0 237 31.6
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 2.5e-15 86.7 248 32.7
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 2.5e-15 86.7 237 32.5
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.3e-15 86.3 234 32.1
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 4.3e-15 85.9 237 30.0
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 5.6e-15 85.5 233 33.0
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 7.3e-15 85.1 233 33.0
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 7.3e-15 85.1 166 38.6
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 9.5e-15 84.7 229 32.8
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 1.2e-14 84.3 235 33.6
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.1e-14 83.6 221 31.7
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.1e-14 83.6 225 32.0
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.1e-14 83.6 237 30.8
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 2.1e-14 83.6 236 32.6
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 2.1e-14 83.6 234 31.2
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 3.6e-14 82.8 239 31.8
Psat2g035320 Pisum sativum HOM05D027503 ORTHO05D005506 4.7e-14 82.4 223 32.3
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.4e-13 80.9 234 31.6
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.0e-13 79.3 236 30.9
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 5.2e-13 79.0 236 30.9
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 8.9e-13 78.2 232 30.6
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.5e-12 77.4 265 31.3
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 1.5e-12 77.4 237 30.8
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.5e-12 77.4 232 28.4
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.6e-12 76.6 236 30.9
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.6e-12 76.6 238 31.1
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 4.4e-12 75.9 237 30.4
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.4e-12 75.9 237 30.4
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 9.9e-12 74.7 238 32.4
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.3e-11 74.3 248 29.4
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 1.3e-11 74.3 228 29.4
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.2e-11 73.6 234 30.3
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.9e-11 72.4 235 29.8
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.9e-11 72.4 239 28.9
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 1.1e-10 71.2 212 32.5
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.1e-10 71.2 223 31.4
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.1e-10 71.2 239 31.4
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 1.4e-10 70.9 222 29.3
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.9e-10 70.5 240 28.3
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 2.4e-10 70.1 233 30.5
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 4.1e-10 69.3 250 32.0
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 7.1e-10 68.6 219 33.3
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 7.1e-10 68.6 226 28.8
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 7.1e-10 68.6 227 29.5
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.2e-09 67.8 229 29.7
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.2e-09 67.8 229 29.7
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 3.5e-09 66.2 234 30.3
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 4.6e-09 65.9 224 29.5
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 3.9e-08 62.8 172 33.7
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.9e-07 60.5 237 31.2
TPR.G12452 Trifolium pratense HOM05D027503 ORTHO05D005506 3.3e-07 59.7 104 35.6
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 2.8e-06 56.6 190 30.5


User provided reference genes

Program Settings