Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 6.5e-135 484.2 268 100.0
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 3.0e-63 246.1 295 55.6
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 1.8e-55 220.3 269 56.1
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.5e-51 207.2 271 53.1
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.0e-50 204.5 272 52.6
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 2.2e-50 203.4 273 52.4
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 5.9e-43 178.7 293 45.1
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.5e-41 173.3 307 41.0
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.7e-40 169.9 305 41.6
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 6.1e-40 168.7 293 42.3
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.0e-39 167.9 302 40.4
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.7e-37 160.6 304 39.8
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 3.7e-37 159.5 308 37.7
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 5.3e-36 155.6 302 40.7
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 7.0e-36 155.2 299 36.5
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 9.1e-36 154.8 286 39.5
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.2e-35 154.5 293 40.3
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.2e-35 154.5 262 40.8
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.5e-35 152.9 297 38.4
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.0e-34 151.4 287 40.8
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 5.0e-34 149.1 290 38.3
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.0e-34 149.1 279 38.4
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 8.5e-34 148.3 287 36.9
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.1e-33 147.9 302 37.7
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.5e-33 146.7 296 35.8
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 4.2e-33 146.0 341 36.7
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 4.2e-33 146.0 289 35.6
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 5.5e-33 145.6 287 36.9
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.2e-32 144.4 306 38.2
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.6e-32 142.9 299 35.8
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 8.0e-32 141.7 299 36.5
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.0e-31 141.4 277 38.6
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 1.8e-31 140.6 292 38.7
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 8.8e-31 138.3 286 37.4
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 1.2e-30 137.9 280 39.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 4.4e-30 136.0 296 35.8
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 2.2e-29 133.7 297 35.4
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 8.3e-29 131.7 285 35.1
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.1e-28 131.3 285 35.8
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.4e-28 131.0 269 37.9
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.4e-28 130.2 276 35.5
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 5.3e-28 129.0 273 38.8
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 5.3e-28 129.0 280 37.5
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 9.1e-28 128.3 305 35.1
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.6e-27 127.5 292 34.9
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.6e-27 127.5 266 36.1
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 7.7e-27 125.2 273 39.6
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.3e-26 124.4 262 36.6
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 1.3e-26 124.4 283 35.0
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.7e-26 124.0 280 37.1
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.7e-26 124.0 275 33.1
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 2.9e-26 123.2 270 34.1
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 3.8e-26 122.9 268 36.2
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.1e-25 121.3 273 36.3
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.1e-25 121.3 273 36.3
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 1.9e-25 120.6 290 34.8
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.9e-25 120.6 274 36.1
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.5e-25 120.2 288 35.1
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 2.5e-25 120.2 271 37.3
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 5.5e-25 119.0 269 37.2
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 7.2e-25 118.6 288 36.8
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 7.2e-25 118.6 288 36.8
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 9.4e-25 118.2 283 34.6
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 2.1e-24 117.1 287 33.4
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.1e-24 117.1 285 33.7
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.1e-24 117.1 276 36.6
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 3.6e-24 116.3 274 35.4
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 3.6e-24 116.3 273 35.5
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 4.7e-24 115.9 289 34.9
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 4.7e-24 115.9 276 33.7
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 4.7e-24 115.9 292 32.9
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 6.1e-24 115.5 271 32.8
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 8.0e-24 115.2 269 35.3
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.4e-23 114.4 278 33.1
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 1.4e-23 114.4 295 33.6
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.4e-23 114.4 290 32.4
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.0e-23 113.2 291 32.3
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 3.0e-23 113.2 279 35.5
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.2e-22 111.3 287 33.1
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.2e-22 111.3 300 33.0
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 3.4e-22 109.8 290 32.1
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 4.4e-22 109.4 283 32.5
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 7.5e-22 108.6 261 36.0
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.3e-21 107.8 299 33.1
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 1.7e-21 107.5 302 32.5
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 1.7e-21 107.5 286 30.8
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 2.8e-21 106.7 280 32.9
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.8e-21 106.7 295 31.2
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 2.4e-20 103.6 300 32.3
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 5.4e-20 102.4 283 33.6
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 7.0e-20 102.1 318 30.8
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.2e-19 101.3 271 32.1
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.6e-19 100.9 273 32.2
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.7e-19 100.1 279 30.1
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 7.7e-19 98.6 304 30.6
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.3e-18 97.8 299 31.8
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 1.7e-18 97.4 294 31.3
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 3.8e-18 96.3 278 32.0
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 3.8e-18 96.3 270 34.4
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.9e-17 94.0 270 31.5
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.9e-17 94.0 279 29.7
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 4.2e-17 92.8 309 28.2
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 5.5e-17 92.4 349 28.4
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 5.5e-17 92.4 349 29.2
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 1.2e-16 91.3 268 31.3
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 2.1e-16 90.5 275 29.8
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 2.1e-16 90.5 229 32.3
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 2.8e-16 90.1 158 36.1
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 4.7e-16 89.4 296 28.7
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 6.1e-16 89.0 277 30.0
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 8.0e-16 88.6 190 35.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 8.0e-16 88.6 267 29.2
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.0e-15 88.2 260 31.5
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.4e-15 87.8 175 33.1
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.4e-15 87.8 276 31.5
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 2.3e-15 87.0 177 35.0
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 2.3e-15 87.0 289 29.1
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 3.0e-15 86.7 173 35.3
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.0e-15 86.7 298 31.5
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.0e-15 86.7 265 29.1
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 4.0e-15 86.3 317 29.7
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 5.2e-15 85.9 274 31.4
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 8.9e-15 85.1 305 29.5
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 8.9e-15 85.1 189 35.4
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 8.9e-15 85.1 238 31.9
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 1.5e-14 84.3 275 29.1
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.5e-14 84.3 285 29.8
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 2.0e-14 84.0 278 29.5
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.0e-14 84.0 270 28.5
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 4.4e-14 82.8 299 30.8
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 5.7e-14 82.4 311 28.3
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.3e-13 81.3 269 33.5
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 3.7e-13 79.7 301 30.2
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 3.7e-13 79.7 215 31.2
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 3.7e-13 79.7 274 27.0
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 4.9e-13 79.3 149 32.9
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.1e-12 78.2 261 29.9
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 1.1e-12 78.2 294 28.2
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.1e-12 78.2 259 31.7
COL.COLO4_18713 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.4e-12 77.8 265 26.4
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.4e-12 77.8 299 29.4
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 1.8e-12 77.4 299 29.1
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 4.1e-12 76.3 166 32.5
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 5.4e-12 75.9 282 28.0
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 7.0e-12 75.5 259 28.2
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 9.2e-12 75.1 258 27.9
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 1.2e-11 74.7 281 29.5
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 1.2e-11 74.7 306 25.5
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 1.6e-11 74.3 295 28.1
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.6e-11 74.3 259 28.6
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 2.0e-11 73.9 266 30.5
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 2.7e-11 73.6 127 37.0
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 3.5e-11 73.2 259 27.8
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 4.5e-11 72.8 257 28.0
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 4.5e-11 72.8 326 27.6
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 5.9e-11 72.4 274 27.0
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 7.8e-11 72.0 257 28.0
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.0e-10 71.6 126 35.7
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 2.3e-10 70.5 283 30.7
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.9e-10 69.7 256 28.9
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 3.9e-10 69.7 299 26.4
Mapoly0020s0159 Marchantia polymorpha HOM05D003500 ORTHO05D003919 1.5e-09 67.8 304 28.6
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 2.5e-09 67.0 165 29.7
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 7.3e-09 65.5 249 28.5
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.6e-08 64.3 137 29.9
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.6e-08 64.3 137 30.7
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 2.8e-08 63.5 165 29.7
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 2.8e-08 63.5 104 41.3
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 2.8e-08 63.5 269 27.9
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 2.8e-08 63.5 135 31.9
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 3.6e-08 63.2 251 26.3
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 6.1e-08 62.4 166 28.3
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 6.1e-08 62.4 264 28.4
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.1e-08 62.4 137 29.9
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 6.1e-08 62.4 198 29.8
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.0e-07 61.6 128 34.4
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.4e-07 61.2 248 29.0
Cpa.g.sc205.12 Carica papaya HOM05D003500 ORTHO05D003919 1.4e-07 61.2 73 52.1
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.8e-07 60.8 125 32.8
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 3.1e-07 60.1 271 28.4
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.1e-07 60.1 126 31.0
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 5.2e-07 59.3 260 26.5
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 3.4e-06 56.6 171 26.3
Sopen06g004460 Solanum pennellii HOM05D003500 ORTHO05D003919 9.8e-06 55.1 40 67.5


User provided reference genes

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