Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 0.0e+00 2580.1 1284 100.0
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 0.0e+00 1469.9 1290 64.1
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 0.0e+00 1394.4 1304 60.6
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 0.0e+00 1343.6 1300 58.5
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 1340.9 1300 58.5
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 1333.9 1300 58.2
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 1327.8 1300 58.0
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 0.0e+00 1288.5 1089 65.4
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 4.2e-264 915.6 1325 44.8
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 3.9e-262 909.1 1317 44.8
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.6e-258 897.1 1369 43.1
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 6.3e-236 822.0 1334 41.8
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 3.3e-224 783.1 1305 40.6
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 1.4e-222 777.7 1345 41.0
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 4.7e-215 752.7 1301 39.7
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 7.6e-213 745.3 1303 39.8
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 9.2e-211 738.4 1300 38.8
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.1e-210 737.3 1321 38.8
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 3.5e-210 736.5 1300 39.5
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 5.6e-200 702.6 1304 38.5
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.4e-197 693.3 1331 39.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 2.2e-196 690.6 1325 38.3
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.3e-193 680.6 1348 38.3
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 2.3e-193 680.6 1289 38.6
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 8.4e-188 662.1 1239 37.5
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.8e-185 654.4 1315 37.9
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.6e-183 647.9 1296 36.6
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.0e-182 643.3 1296 36.6
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.4e-181 640.2 1278 37.2
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.0e-180 638.6 1269 37.0
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.3e-177 628.2 1323 37.3
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.0e-177 627.1 1269 36.8
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.1e-170 604.4 1245 35.7
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.3e-153 547.7 1432 33.7
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 4.4e-144 516.9 1318 32.6
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.2e-135 488.0 474 58.9
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.3e-135 486.5 474 58.6
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.8e-134 485.0 476 58.4
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 3.5e-125 454.1 1309 31.4
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 4.5e-125 453.8 1299 32.0
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.3e-124 451.4 1330 31.7
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 8.6e-124 449.5 1278 31.5
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.1e-123 449.1 1311 31.6
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.9e-123 448.4 1284 32.0
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 2.5e-123 448.0 1050 32.1
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 5.6e-123 446.8 1304 31.4
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.2e-122 445.7 1339 32.0
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 2.1e-122 444.9 1306 31.5
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.2e-120 439.1 1283 31.7
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 2.4e-118 431.4 1293 31.1
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 4.1e-118 430.6 1276 30.6
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 2.0e-117 428.3 1279 31.0
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 5.2e-113 413.7 1292 30.7
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 6.8e-113 413.3 1297 30.2
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.5e-112 412.1 1304 30.1
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.9e-111 407.9 1295 30.3
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 8.3e-111 406.4 821 36.5
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 1.6e-109 402.1 1282 29.6
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.5e-109 401.0 471 51.2
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.5e-107 394.8 1302 30.3
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.7e-103 382.1 336 61.9
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.4e-102 378.3 1098 32.1
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 9.5e-99 366.3 1320 29.7
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 1.3e-95 355.9 1307 29.6
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.9e-94 352.1 1314 29.1
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 5.6e-91 340.5 1291 28.4
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 2.6e-88 331.6 1269 28.7
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 9.9e-88 329.7 1292 28.9
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.3e-87 329.3 1293 27.6
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 4.0e-81 307.8 1325 27.7
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.6e-77 295.8 1261 28.5
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.0e-76 293.1 1265 27.4
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.5e-75 289.3 1345 25.4
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.8e-74 285.0 1398 26.5
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.1e-73 283.1 299 56.2
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 3.4e-72 278.1 1357 28.3
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.2e-69 269.6 1284 27.3
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 1.0e-68 266.5 1300 27.1
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.5e-67 262.7 1268 27.4
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 5.6e-67 260.8 1273 27.3
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.5e-64 252.7 1279 27.2
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.6e-64 251.9 1304 25.5
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.5e-64 251.1 554 36.1
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.1e-62 246.5 1319 25.9
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 7.9e-61 240.4 1276 27.4
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.3e-60 239.6 1261 25.7
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.9e-59 235.7 1272 26.7
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 9.6e-59 233.4 394 38.6
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 1.6e-58 232.6 592 34.0
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.2e-53 216.5 1269 25.5
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 2.1e-53 215.7 1384 25.1
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.9e-51 209.1 1320 24.4
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.8e-49 202.6 745 30.1
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.3e-49 201.1 1321 23.5
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 6.9e-49 200.7 270 43.0
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.6e-48 198.7 1329 23.9
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 7.7e-48 197.2 1273 25.6
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 1.0e-47 196.8 1278 25.3
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 1.0e-47 196.8 1278 25.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.0e-47 196.8 1259 24.9
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.0e-47 196.8 1315 24.0
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 2.2e-47 195.7 1260 24.8
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 8.5e-47 193.7 1065 26.3
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 1.4e-46 193.0 1279 25.0
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 5.5e-46 191.0 1336 24.7
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.6e-45 189.5 1233 23.0
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.1e-44 184.5 1328 23.4
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.7e-44 184.1 1334 23.5
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 6.7e-44 184.1 1314 24.3
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 4.4e-43 181.4 1381 25.5
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.4e-41 175.6 1274 25.1
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 4.1e-41 174.9 1274 25.0
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 5.3e-41 174.5 1272 24.9
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 8.5e-39 167.2 1304 24.0
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 3.2e-38 165.2 1338 24.1
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 4.7e-37 161.4 1256 24.1
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 6.1e-37 161.0 1270 23.9
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.8e-36 159.5 1338 24.1
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 4.4e-35 154.8 1256 24.0
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.8e-33 149.4 810 26.3
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 7.7e-32 144.1 1260 23.1
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 1.5e-30 139.8 1313 24.8
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 8.0e-29 134.0 556 28.6
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 5.2e-28 131.3 1211 23.5
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 7.5e-27 127.5 1314 21.8
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.3e-26 126.7 1265 24.0
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.7e-26 126.3 1311 23.1
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.7e-26 125.2 1129 24.4
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 8.2e-26 124.0 705 24.0
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.1e-25 123.6 1268 22.2
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 3.1e-25 122.1 1294 23.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 2.0e-24 119.4 1037 22.6
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.5e-24 118.2 249 35.3
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 1.7e-23 116.3 1316 23.6
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.0e-23 114.8 819 24.9
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.5e-22 113.2 988 23.4
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.5e-22 113.2 366 31.7
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.6e-21 109.8 120 48.3
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 3.6e-21 108.6 557 26.4
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 8.0e-21 107.5 1095 23.6
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 2.2e-18 99.4 210 35.2
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.7e-18 98.6 1328 22.7
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 8.3e-18 97.4 1357 22.5
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 5.4e-17 94.7 765 23.8
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 7.0e-17 94.4 547 27.1
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 7.0e-17 94.4 140 36.4
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 7.7e-16 90.9 110 45.5
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 2.9e-15 89.0 740 24.1
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.1e-14 87.0 109 46.8
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.5e-14 86.7 557 26.2
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 1.9e-14 86.3 116 43.1
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.2e-14 85.5 855 22.5
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.6e-13 83.2 412 26.2
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 2.1e-13 82.8 112 40.2
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 4.7e-13 81.6 110 38.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.0e-12 80.5 766 22.3
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.0e-12 80.5 1141 23.0
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-12 80.1 256 30.5
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.8e-12 79.7 1285 21.9
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 4.0e-12 78.6 104 48.1
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 1.5e-11 76.6 320 23.4
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 3.4e-11 75.5 155 31.0
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 3.4e-11 75.5 145 33.8
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 3.7e-10 72.0 86 41.9
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 3.7e-10 72.0 103 34.0
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 1.1e-09 70.5 62 46.8
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 1.4e-09 70.1 95 40.0
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 1.8e-09 69.7 98 41.8
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 2.4e-09 69.3 146 37.0
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 5.4e-09 68.2 81 42.0
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 2.7e-08 65.9 733 22.4
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 2.7e-08 65.9 98 37.8
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 2.9e-07 62.4 95 38.9
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 3.8e-07 62.0 65 44.6
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 5.0e-07 61.6 148 31.8
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.9e-06 59.7 62 43.5
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.5e-06 59.3 61 44.3
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 4.3e-06 58.5 357 23.8
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 7.3e-06 57.8 574 23.5


User provided reference genes

Program Settings