Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 4.1e-309 1063.9 543 100.0
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 7.8e-260 900.2 543 84.0
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 3.7e-246 854.7 544 81.1
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.7e-235 819.3 543 77.7
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.9e-234 815.8 543 77.3
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 2.0e-231 805.8 544 76.7
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.8e-225 784.6 562 74.0
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 4.0e-216 755.0 550 72.2
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.0e-215 752.7 547 72.4
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.9e-210 736.1 539 70.5
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.3e-206 723.4 553 69.8
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 8.4e-206 720.7 558 67.0
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.2e-205 718.4 553 70.0
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 4.6e-204 714.9 544 69.1
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 1.8e-203 713.0 548 68.6
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 5.1e-203 711.4 548 69.2
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.5e-202 709.9 544 70.8
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 3.2e-197 692.2 550 66.9
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 2.8e-193 679.1 548 65.9
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 6.9e-192 674.5 546 65.4
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.2e-191 673.7 549 64.3
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.5e-191 673.3 548 65.1
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.0e-191 672.9 543 65.6
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.0e-191 672.9 548 66.4
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 7.7e-191 671.0 549 64.3
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 3.8e-190 668.7 548 65.3
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 7.2e-189 664.5 544 63.1
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 2.8e-185 652.5 554 64.1
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.7e-185 652.1 556 63.5
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.0e-182 644.0 553 62.4
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.1e-181 640.6 550 62.2
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 5.5e-181 638.3 554 62.1
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 6.1e-180 634.8 551 62.8
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 2.3e-179 632.9 560 61.6
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 8.8e-179 630.9 550 61.3
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 6.3e-177 624.8 550 61.6
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 8.2e-177 624.4 550 60.0
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.1e-176 624.0 539 61.2
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.8e-176 623.2 556 60.6
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 5.3e-176 621.7 539 61.2
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.2e-175 620.5 544 61.2
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.6e-175 619.4 535 61.9
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.6e-175 619.4 539 62.0
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 2.6e-175 619.4 544 61.0
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 5.9e-175 618.2 539 61.6
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 5.9e-175 618.2 553 60.4
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.9e-174 615.9 555 60.4
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 5.0e-174 615.1 548 61.1
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.2e-173 612.1 552 60.3
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 9.4e-173 610.9 541 60.8
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 2.7e-172 609.4 560 58.6
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 2.7e-172 609.4 546 60.8
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 6.1e-172 608.2 559 59.0
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 8.0e-172 607.8 560 58.4
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 8.0e-172 607.8 547 60.0
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 3.9e-171 605.5 553 59.0
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 6.7e-171 604.7 563 58.6
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.6e-170 602.8 550 60.4
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 4.4e-170 602.1 554 59.6
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 5.7e-170 601.7 547 60.0
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.7e-169 600.1 567 56.6
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 3.7e-169 599.0 556 58.6
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 4.8e-169 598.6 557 60.5
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.1e-168 597.4 556 59.4
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.1e-168 597.4 544 59.9
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.8e-168 596.7 557 58.5
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 1.8e-168 596.7 559 58.7
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 2.4e-168 596.3 552 59.1
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 3.1e-168 595.9 554 58.7
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 4.1e-168 595.5 553 58.8
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 4.1e-168 595.5 622 55.3
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 4.1e-168 595.5 539 60.1
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 5.3e-168 595.1 557 59.1
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 5.3e-168 595.1 557 59.1
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 5.3e-168 595.1 523 60.0
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.2e-167 594.0 548 58.2
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.6e-167 593.6 543 60.2
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 2.0e-167 593.2 547 60.5
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.7e-166 590.1 553 59.0
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.5e-165 586.3 609 53.9
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 1.0e-163 580.9 555 56.8
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.0e-163 578.9 556 56.7
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.2e-162 577.4 495 61.4
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 4.4e-162 575.5 557 55.1
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.3e-161 573.9 575 55.8
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.3e-161 573.9 546 56.0
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 6.3e-161 571.6 521 59.9
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 8.3e-161 571.2 545 58.9
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 4.5e-159 565.5 554 57.2
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 4.2e-157 558.9 576 55.7
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.6e-156 557.0 478 64.9
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 8.0e-156 554.7 556 55.8
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 4.0e-155 552.4 520 59.8
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 6.8e-155 551.6 504 57.7
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 8.8e-155 551.2 498 59.6
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 5.7e-154 548.5 466 62.7
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 7.5e-154 548.1 554 55.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.3e-153 547.4 489 60.5
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.7e-151 539.7 520 57.7
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 5.9e-151 538.5 545 54.7
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 7.7e-151 538.1 453 66.4
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 6.1e-148 528.5 495 59.2
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 1.0e-147 527.7 602 49.2
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 3.0e-147 526.2 575 50.4
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 7.0e-144 515.0 556 53.2
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.6e-143 513.8 542 51.5
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.5e-143 512.7 479 56.2
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 3.5e-143 512.7 469 55.9
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.9e-141 506.9 527 53.5
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.6e-140 503.8 563 53.1
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 3.1e-139 499.6 536 51.9
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 2.9e-137 493.0 501 51.7
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.9e-136 490.3 555 51.0
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 2.0e-135 486.9 554 50.2
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.8e-131 471.9 541 51.2
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.7e-118 430.6 537 47.1
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 3.0e-118 429.9 322 69.6
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.1e-117 427.9 559 46.5
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.9e-117 427.2 459 52.1
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 4.3e-117 426.0 458 55.7
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 2.0e-114 417.2 500 49.2
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.6e-110 402.1 573 42.9
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.6e-110 402.1 573 42.9
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.9e-109 400.6 572 42.8
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.9e-107 392.1 538 42.8
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 1.2e-106 391.3 495 44.6
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-106 390.6 584 39.9
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 4.3e-101 372.9 327 62.1
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 2.4e-96 357.1 466 48.3
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 4.0e-91 339.7 556 39.4
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 3.8e-89 333.2 360 50.6
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.1e-79 299.3 610 34.6
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 1.3e-78 298.1 698 32.1
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-75 288.5 580 34.7
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 4.5e-74 283.1 454 41.2
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 5.9e-74 282.7 181 72.4
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 2.1e-71 274.2 168 75.6
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 6.7e-70 269.2 397 44.6
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.6e-58 231.5 185 67.6
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 3.5e-58 230.3 155 76.1
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 2.8e-52 210.7 261 50.6
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 1.8e-46 191.4 192 50.0
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.8e-43 181.4 276 42.8
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.4e-43 181.0 167 61.7
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 4.5e-42 176.8 153 63.4
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.0e-38 163.7 147 62.6
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 8.8e-38 162.5 136 64.7
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 5.7e-37 159.8 96 72.9
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 4.5e-34 150.2 132 59.1
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.7e-28 130.6 94 68.1
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 8.0e-23 112.8 166 38.0
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.4e-22 112.1 180 35.0
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.4e-19 101.3 97 57.7
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 5.4e-19 100.1 102 51.0
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.3e-17 94.7 68 63.2
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 2.1e-10 71.6 39 79.5


User provided reference genes

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