Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 3.5e-109 398.3 199 100.0
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 2.4e-86 322.4 199 82.9
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.2e-85 320.1 191 82.7
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.3e-81 304.7 191 79.1
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.2e-79 299.3 191 78.5
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 3.6e-69 265.4 195 69.7
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 4.6e-69 265.0 195 69.7
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 2.8e-66 255.8 200 65.5
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 3.7e-66 255.4 206 66.5
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.8e-65 253.1 193 67.9
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 5.3e-65 251.5 199 66.3
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 9.1e-65 250.8 191 68.6
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 5.9e-64 248.1 191 67.0
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.4e-62 243.4 181 69.6
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 3.2e-62 242.3 187 67.9
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 1.6e-61 240.0 206 64.1
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 2.7e-61 239.2 199 64.8
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.0e-60 237.3 200 64.5
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 3.0e-60 235.7 193 64.8
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 6.7e-60 234.6 153 76.5
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 1.5e-59 233.4 197 64.5
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 7.4e-59 231.1 194 62.4
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.3e-58 230.3 201 60.7
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.2e-58 229.6 158 71.5
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 2.8e-58 229.2 206 61.2
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 8.2e-58 227.6 199 60.3
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 1.1e-57 227.3 181 65.7
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.1e-57 227.3 175 65.1
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 9.1e-57 224.2 182 63.2
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.5e-56 223.4 189 60.8
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.6e-56 222.6 182 64.3
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 5.9e-56 221.5 285 47.4
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 7.7e-56 221.1 198 57.6
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.0e-55 220.7 187 60.4
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 1.0e-55 220.7 183 63.4
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.0e-55 220.7 209 57.4
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 1.7e-55 219.9 189 61.9
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 3.8e-55 218.8 198 56.6
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.8e-55 218.8 150 74.0
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.0e-55 218.4 166 65.7
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 5.0e-55 218.4 172 66.3
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 8.5e-55 217.6 194 59.3
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 8.5e-55 217.6 185 60.0
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 1.1e-54 217.2 190 61.1
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.4e-54 216.9 190 59.5
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.2e-54 215.7 188 60.6
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 4.2e-54 215.3 189 60.3
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 4.2e-54 215.3 200 58.0
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 9.4e-54 214.2 193 59.6
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.1e-53 213.0 180 61.7
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 3.6e-53 212.2 206 55.3
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.0e-52 210.7 176 64.8
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.4e-52 210.3 178 62.9
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.8e-52 209.9 193 56.5
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.8e-52 209.9 189 57.1
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.3e-52 209.5 167 65.9
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 3.9e-52 208.8 183 61.7
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 3.9e-52 208.8 184 59.2
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.2e-52 208.4 157 66.9
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 6.7e-52 208.0 198 59.1
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 8.8e-52 207.6 181 62.4
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 1.1e-51 207.2 191 58.6
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 1.1e-51 207.2 202 56.4
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 2.0e-51 206.5 156 66.7
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 2.6e-51 206.1 155 68.4
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.3e-51 205.7 156 69.2
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 5.7e-51 204.9 181 60.8
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 7.4e-51 204.5 180 57.2
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 9.7e-51 204.1 156 68.6
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 9.7e-51 204.1 148 69.6
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.3e-50 203.8 178 57.9
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.3e-50 203.8 189 57.1
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 3.7e-50 202.2 192 58.3
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 3.7e-50 202.2 192 58.3
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 3.7e-50 202.2 192 58.3
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 6.3e-50 201.4 178 59.6
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 1.8e-49 199.9 160 64.4
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 2.4e-49 199.5 202 52.5
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.4e-49 199.5 186 58.1
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 4.1e-49 198.7 188 58.0
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 2.0e-48 196.4 173 59.0
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 2.6e-48 196.1 190 57.4
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.6e-48 196.1 166 60.2
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 7.7e-48 194.5 185 57.3
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.3e-47 193.7 190 55.3
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 2.2e-47 193.0 160 63.1
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 5.0e-47 191.8 191 55.0
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 8.5e-47 191.0 174 58.0
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 3.2e-46 189.1 145 65.5
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 4.2e-46 188.7 180 56.7
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 4.2e-46 188.7 185 55.7
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 7.2e-46 188.0 156 61.5
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.2e-45 187.2 161 62.1
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 2.2e-42 176.4 147 57.8
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.1e-41 174.1 137 62.0
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.1e-41 172.6 178 50.6
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 4.1e-41 172.2 206 51.0
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 4.1e-41 172.2 161 57.8
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.7e-39 166.8 175 51.4
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 2.2e-39 166.4 124 69.4
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.5e-38 163.7 187 50.3
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.5e-38 162.9 110 72.7
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 3.2e-38 162.5 118 66.9
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 4.2e-38 162.2 142 62.7
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 7.2e-38 161.4 144 61.8
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.7e-37 159.5 154 55.8
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.4e-36 157.1 152 56.6
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 5.2e-36 155.2 179 50.8
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.2e-35 154.1 141 58.2
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 2.6e-35 152.9 148 55.4
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 1.3e-34 150.6 121 63.6
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.7e-34 150.2 181 50.3
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 5.4e-33 145.2 132 56.8
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 5.9e-32 141.7 174 48.3
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 5.9e-32 141.7 174 48.3
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 7.2e-30 134.8 158 48.7
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 8.8e-28 127.9 136 52.9
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 4.4e-27 125.6 128 56.2
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 2.2e-26 123.2 109 58.7
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 6.3e-26 121.7 108 61.1
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 2.0e-24 116.7 193 37.8
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 3.5e-24 115.9 120 54.2
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 3.8e-23 112.5 80 70.0
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 9.5e-22 107.8 167 42.5
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 4.0e-20 102.4 90 57.8
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.2e-17 92.8 77 63.6
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 6.6e-15 85.1 69 62.3
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 2.5e-14 83.2 73 60.3
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 2.6e-11 73.2 174 35.1
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.2e-10 70.1 78 44.9
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.9e-09 67.0 65 53.8
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.6e-08 63.9 96 45.8
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-08 62.4 110 34.5
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 4.6e-08 62.4 158 29.7
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 7.8e-08 61.6 59 47.5
AUR62033068 Chenopodium quinoa HOM05D000002 ORTHO05D000001 3.9e-07 59.3 62 51.6


User provided reference genes

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