Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 8.8e-81 303.5 149 100.0
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 1.6e-58 229.6 148 80.4
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 3.0e-52 208.8 149 71.8
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 5.6e-51 204.5 150 72.0
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 2.1e-50 202.6 149 72.5
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 4.4e-48 194.9 161 68.3
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 1.9e-46 189.5 151 69.5
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 5.0e-44 181.4 149 65.1
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 1.5e-43 179.9 149 65.8
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 1.9e-43 179.5 149 65.1
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 1.2e-42 176.8 149 64.4
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 3.6e-42 175.3 149 65.1
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 4.7e-42 174.9 149 64.4
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 6.2e-42 174.5 161 64.6
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 1.8e-41 172.9 149 63.1
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 1.8e-41 172.9 149 63.8
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 3.1e-41 172.2 157 60.5
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 5.2e-41 171.4 149 61.7
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 1.2e-40 170.2 163 58.3
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 1.2e-40 170.2 154 61.7
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 2.6e-40 169.1 151 61.6
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 3.4e-40 168.7 109 77.1
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 5.8e-40 167.9 149 61.1
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 9.9e-40 167.2 149 62.4
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 2.2e-39 166.0 150 62.0
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 2.9e-39 165.6 152 62.5
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 2.9e-39 165.6 112 75.9
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 2.9e-39 165.6 149 61.7
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 3.7e-39 165.2 137 63.5
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 4.9e-39 164.9 101 79.2
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 1.1e-38 163.7 112 75.0
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 3.2e-38 162.2 149 59.1
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 3.2e-38 162.2 105 76.2
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 7.1e-38 161.0 150 62.0
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 7.1e-38 161.0 96 80.2
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 1.6e-37 159.8 97 79.4
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 2.1e-37 159.5 149 60.4
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 2.1e-37 159.5 149 60.4
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 2.1e-37 159.5 97 79.4
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 2.1e-37 159.5 96 78.1
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 2.1e-37 159.5 104 74.0
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 2.7e-37 159.1 152 60.5
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 3.5e-37 158.7 152 59.9
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 3.5e-37 158.7 124 66.1
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 4.6e-37 158.3 158 55.1
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 4.6e-37 158.3 104 76.0
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 4.6e-37 158.3 152 56.6
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 4.6e-37 158.3 96 76.0
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 1.3e-36 156.8 96 77.1
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 3.9e-36 155.2 96 75.0
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 5.1e-36 154.8 97 73.2
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 5.1e-36 154.8 101 73.3
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 6.6e-36 154.5 150 58.0
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.5e-35 153.3 95 78.9
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 2.5e-35 152.5 107 71.0
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 3.3e-35 152.1 109 66.1
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 4.3e-35 151.8 109 67.0
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 2.1e-34 149.4 96 71.9
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 4.7e-34 148.3 97 70.1
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 6.2e-34 147.9 104 69.2
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 1.1e-33 147.1 104 70.2
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 2.4e-33 146.0 148 56.1
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 3.1e-33 145.6 105 72.4
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 5.2e-33 144.8 97 68.0
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 6.8e-33 144.4 156 50.0
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 8.9e-33 144.1 105 67.6
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 3.4e-32 142.1 98 71.4
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 7.6e-32 141.0 105 68.6
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 7.6e-32 141.0 105 70.5
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 2.9e-31 139.0 105 64.8
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 3.8e-31 138.7 124 56.5
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 4.9e-31 138.3 147 49.7
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 4.9e-31 138.3 104 61.5
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 4.9e-31 138.3 97 71.1
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 4.9e-31 138.3 150 50.0
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 6.4e-31 137.9 109 66.1
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 8.4e-31 137.5 109 65.1
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 1.4e-30 136.7 157 47.8
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 1.4e-30 136.7 157 47.8
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 1.4e-30 136.7 113 62.8
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 1.9e-30 136.3 157 49.0
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 2.4e-30 136.0 123 60.2
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 2.4e-30 136.0 109 65.1
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 3.2e-30 135.6 160 49.4
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 3.2e-30 135.6 149 51.0
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 4.1e-30 135.2 99 68.7
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 4.1e-30 135.2 149 51.0
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 4.1e-30 135.2 109 64.2
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 7.1e-30 134.4 126 57.1
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 7.1e-30 134.4 160 52.5
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 9.2e-30 134.0 159 52.8
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 1.2e-29 133.7 93 68.8
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 1.2e-29 133.7 96 66.7
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 1.6e-29 133.3 151 49.7
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 1.6e-29 133.3 97 69.1
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 2.1e-29 132.9 152 48.7
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 3.5e-29 132.1 151 49.7
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 3.0e-28 129.0 98 59.2
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 6.6e-28 127.9 152 48.0
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 8.7e-28 127.5 154 46.8
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 1.5e-27 126.7 152 49.3
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 1.9e-27 126.3 150 47.3
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 9.6e-27 124.0 98 63.3
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 9.6e-27 124.0 164 43.9
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 9.6e-27 124.0 127 57.5
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 2.6e-24 115.9 73 76.7
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 8.4e-23 110.9 183 38.8
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 3.2e-22 109.0 105 51.4
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 1.2e-21 107.1 61 80.3
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 1.7e-20 103.2 116 54.3
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 3.0e-20 102.4 101 56.4
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 1.5e-19 100.1 104 48.1
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 2.8e-18 95.9 55 81.8
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 1.1e-17 94.0 106 52.8
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 1.1e-17 94.0 103 40.8
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 2.2e-15 86.3 105 39.0
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 2.2e-15 86.3 100 54.0
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 6.4e-15 84.7 96 43.8
Rhsim07G0144900 Rhododendron simsii HOM05D006497 ORTHO05D008263 3.9e-12 75.5 46 73.9
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 5.6e-11 71.6 95 40.0
MBI13_g38674_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 9.9e-08 60.8 141 34.8
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 9.9e-08 60.8 92 35.9


User provided reference genes

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