Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1899.8 936 100.0
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1559.3 925 83.6
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1508.4 934 80.5
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1488.4 928 80.3
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1428.3 930 77.0
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1392.1 939 75.4
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1375.9 933 73.7
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1373.2 926 75.2
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1352.4 936 72.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1343.2 944 71.2
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1330.5 933 72.6
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1313.1 932 71.7
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1313.1 936 70.3
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1309.7 931 69.9
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1301.2 921 72.3
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1289.2 948 69.6
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1287.3 949 69.3
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1284.2 944 69.9
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1283.9 935 69.3
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1283.9 943 70.6
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1280.8 933 69.9
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1275.8 936 70.0
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1275.8 953 69.4
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1267.3 944 68.9
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1264.2 1032 64.7
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1259.2 952 68.5
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1255.7 998 66.5
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1254.2 928 69.2
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1253.4 950 68.1
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1250.3 970 65.8
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1247.3 952 68.8
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1244.2 946 67.5
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1243.4 955 66.8
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1242.3 952 68.6
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1235.3 949 67.0
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1230.3 929 68.2
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1229.5 881 69.7
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1228.8 939 66.6
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1223.4 933 67.5
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1221.8 940 65.9
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1219.9 933 68.0
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1191.8 930 65.2
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1191.0 942 65.3
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1190.3 1020 62.8
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1189.5 935 65.8
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1185.2 930 65.2
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1182.9 942 64.2
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1182.5 1029 60.4
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1179.9 953 65.3
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1177.9 931 65.3
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1171.0 940 64.8
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1168.3 1059 60.1
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1167.5 952 62.6
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1167.1 936 64.3
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1166.4 935 63.6
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1166.0 951 62.5
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1165.2 926 65.0
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 940 63.2
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1161.7 946 65.0
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1159.4 884 68.9
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1158.3 824 71.7
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1156.4 950 62.9
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1155.6 953 63.5
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1155.2 933 62.9
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1154.8 933 62.8
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1152.9 936 62.7
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1152.1 956 62.1
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1151.7 937 63.5
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 952 62.0
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1143.6 1006 60.5
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1140.6 1006 59.9
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1140.2 1006 59.9
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 991 60.8
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 946 61.7
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 952 61.9
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 949 61.9
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1136.3 938 61.7
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1132.5 948 61.7
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 946 61.7
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 946 61.7
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 973 61.3
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 943 61.5
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1117.8 927 62.1
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1116.3 939 63.0
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1112.1 980 59.7
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1110.9 936 61.4
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 943 61.0
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 943 61.0
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 975 60.7
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1108.6 932 61.8
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1103.6 963 59.6
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1082.8 928 60.7
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 963 58.4
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 939 59.7
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 919 60.5
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 1.3e-311 1073.2 1058 55.8
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 4.9e-310 1067.8 851 66.2
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 5.4e-309 1064.3 861 64.0
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.0e-307 1060.1 931 60.6
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.9e-307 1058.5 860 63.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.1e-306 1056.6 902 62.4
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.5e-306 1055.4 909 61.5
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 4.0e-304 1048.1 935 58.2
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 8.6e-299 1030.4 967 58.5
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.4e-296 1023.1 1168 51.2
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.0e-295 1019.2 969 57.5
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.6e-295 1018.8 929 58.2
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.2e-294 1015.8 965 56.6
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.6e-292 1009.6 1060 53.7
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 4.7e-289 998.0 821 63.0
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.6e-287 992.3 938 56.1
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 8.6e-267 924.1 763 62.4
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.7e-259 899.8 937 53.8
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 8.7e-259 897.5 963 53.0
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 8.7e-259 897.5 762 60.8
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.3e-254 883.6 700 66.9
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.8e-251 873.2 1002 49.3
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 5.6e-242 841.6 848 53.2
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.2e-239 833.9 862 51.7
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.1e-226 790.8 1084 42.6
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.0e-222 777.7 717 58.3
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.8e-209 733.0 644 59.2
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.5e-202 710.7 672 56.8
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 8.0e-196 688.3 691 56.9
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.7e-190 670.6 754 51.3
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.1e-184 651.4 412 77.7
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 4.6e-167 592.8 469 66.5
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.4e-162 576.6 356 80.1
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-158 564.7 402 72.9
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 7.8e-151 538.9 387 71.1
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-142 511.5 712 44.4
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 4.0e-139 500.0 625 47.4
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 8.4e-129 465.7 480 54.6
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.2e-128 463.8 569 48.3
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 3.9e-118 430.3 285 73.7
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.5e-117 428.3 299 71.2
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 2.6e-114 417.5 310 67.7
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.9e-105 387.5 328 58.5
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.2e-95 355.5 327 56.3
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 2.0e-90 338.2 224 75.9
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 2.1e-55 221.9 166 68.1
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.4e-54 219.2 139 71.9
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.9e-52 210.7 212 52.8
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.4e-46 192.6 130 73.1
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.9e-44 184.9 289 44.6
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.2e-42 179.5 133 66.2
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 5.1e-33 147.5 160 50.0
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.4e-30 139.4 105 65.7
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.6e-29 135.2 80 82.5
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.7e-26 125.2 109 57.8
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 5.3e-22 110.9 86 57.0
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 6.9e-22 110.5 66 78.8
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 3.2e-19 101.7 282 31.2
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 3.3e-16 91.7 159 37.1
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.1e-15 89.0 57 77.2
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.0e-13 82.4 73 60.3
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.6e-13 82.0 61 62.3
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.3e-09 68.9 68 47.1
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 8.7e-09 67.0 51 60.8
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.5e-08 65.5 35 80.0
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.3e-08 65.1 83 38.6
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.6e-07 62.8 53 60.4
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.1e-07 62.4 53 52.8
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.1e-07 62.4 53 52.8
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 2.8e-07 62.0 53 52.8
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 4.8e-07 61.2 145 32.4
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 5.3e-06 57.8 52 57.7
VMungo0251G2090 Vigna mungo HOM05D003461 ORTHO05D006812 9.0e-06 57.0 32 75.0


User provided reference genes

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