Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G436600 Prunus persica HOM05D000955 ORTHO05D001429 2.8e-51 204.9 99 100.0
Prupe.1G436700 Prunus persica HOM05D000955 ORTHO05D001429 1.7e-19 99.4 103 53.4
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 8.1e-14 80.5 97 51.5
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 3.1e-13 78.6 95 47.4
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 2.6e-12 75.5 73 50.7
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 9.9e-12 73.6 73 49.3
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 1.7e-11 72.8 81 50.6
Prupe.1G436400 Prunus persica HOM05D000955 ORTHO05D001429 1.7e-11 72.8 79 53.2
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 4.9e-11 71.2 93 45.2
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 1.1e-10 70.1 78 50.0
RcHm_v2.0_Chr3g0490571 Rosa chinensis HOM05D000955 ORTHO05D001429 1.1e-10 70.1 72 47.2
Atru.chr13.674 Acer truncatum HOM05D000955 ORTHO05D001429 1.9e-10 69.3 93 41.9
FvH4_2g34530 Fragaria vesca HOM05D000955 ORTHO05D001429 1.9e-10 69.3 94 40.4
FAN20G2972 Fragaria x ananassa HOM05D017863 ORTHO05D020646 1.9e-10 69.3 76 50.0
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 2.4e-10 68.9 73 47.9
Sed0002759 Sechium edule HOM05D000955 ORTHO05D001429 2.4e-10 68.9 81 46.9
CiPaw.15G058900 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.2e-10 68.6 81 44.4
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.1e-10 68.2 93 44.1
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 4.1e-10 68.2 93 44.1
Atru.chr13.660 Acer truncatum HOM05D000955 ORTHO05D001429 5.4e-10 67.8 73 46.6
RcHm_v2.0_Chr6g0307631 Rosa chinensis HOM05D000955 ORTHO05D001429 7.1e-10 67.4 84 45.2
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 9.2e-10 67.0 75 48.0
Atru.chr13.678 Acer truncatum HOM05D000955 ORTHO05D001429 1.6e-09 66.2 80 46.2
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 2.1e-09 65.9 76 46.1
Prupe.1G437100 Prunus persica HOM05D000955 ORTHO05D001429 2.7e-09 65.5 84 40.5
Ciclev10003391m.g Citrus clementina HOM05D000955 ORTHO05D001429 3.5e-09 65.1 63 47.6
Sed0000195 Sechium edule HOM05D000955 ORTHO05D001429 3.5e-09 65.1 74 48.6
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 4.6e-09 64.7 79 46.8
Gohir.D01G107400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.0e-09 64.3 82 45.1
Gorai.002G131800 Gossypium raimondii HOM05D000955 ORTHO05D001429 6.0e-09 64.3 82 45.1
CAN.G1518.8 Capsicum annuum HOM05D000955 ORTHO05D001429 7.8e-09 63.9 76 47.4
CsaV3_2G027840 Cucumis sativus L. HOM05D000955 ORTHO05D001429 7.8e-09 63.9 57 57.9
Manes.18G036400 Manihot esculenta HOM05D000955 ORTHO05D001429 7.8e-09 63.9 77 46.8
Gohir.A01G119200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.0e-08 63.5 82 43.9
FAN27G1403 Fragaria x ananassa HOM05D000955 ORTHO05D001429 1.7e-08 62.8 76 42.1
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 1.7e-08 62.8 79 44.3
FAN20G2975 Fragaria x ananassa HOM05D000955 ORTHO05D001429 2.3e-08 62.4 76 40.8
Manes.05G172901 Manihot esculenta HOM05D000955 ORTHO05D001429 2.3e-08 62.4 89 40.4
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 2.3e-08 62.4 73 43.8
Atru.chr13.677 Acer truncatum HOM05D000955 ORTHO05D001429 3.0e-08 62.0 80 47.5
RcHm_v2.0_Chr6g0278331 Rosa chinensis HOM05D000955 ORTHO05D001429 3.0e-08 62.0 77 44.2
Sc15g0003430 Simmondsia chinensis HOM05D000955 ORTHO05D001429 3.0e-08 62.0 78 43.6
Lsat_1_v5_gn_4_125420 Lactuca sativa HOM05D000955 ORTHO05D001429 3.9e-08 61.6 76 39.5
Prupe.1G437200 Prunus persica HOM05D000955 ORTHO05D001429 3.9e-08 61.6 78 42.3
RcHm_v2.0_Chr6g0278301 Rosa chinensis HOM05D000955 ORTHO05D001429 3.9e-08 61.6 77 45.5
Sed0022742 Sechium edule HOM05D000955 ORTHO05D001429 3.9e-08 61.6 46 65.2
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 5.1e-08 61.2 77 48.1
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 5.1e-08 61.2 76 47.4
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.1e-08 61.2 81 45.7
Cfa018544 Carpinus fangiana HOM05D000955 ORTHO05D001429 6.6e-08 60.8 80 40.0
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 6.6e-08 60.8 76 43.4
Prupe.1G436900 Prunus persica HOM05D000955 ORTHO05D001429 6.6e-08 60.8 84 38.1
Cfa018542 Carpinus fangiana HOM05D000955 ORTHO05D001429 8.6e-08 60.5 76 40.8
ClCG08G015910 Citrullus lanatus HOM05D000955 ORTHO05D001429 8.6e-08 60.5 55 56.4
QL02p005168 Quercus lobata HOM05D000955 ORTHO05D001429 8.6e-08 60.5 75 44.0
RcHm_v2.0_Chr6g0307801 Rosa chinensis HOM05D017863 ORTHO05D020646 8.6e-08 60.5 84 42.9
FvH4_2g34520 Fragaria vesca HOM05D017863 ORTHO05D020646 1.1e-07 60.1 82 42.7
HanXRQChr09g0267841 Helianthus annuus HOM05D000955 ORTHO05D001429 1.1e-07 60.1 78 37.2
Thecc.04G032600 Theobroma cacao HOM05D000955 ORTHO05D001429 1.1e-07 60.1 75 42.7
Thecc.08G008500 Theobroma cacao HOM05D000955 ORTHO05D001429 1.1e-07 60.1 71 47.9
Atru.chr13.672 Acer truncatum HOM05D000955 ORTHO05D001429 1.5e-07 59.7 73 41.1
Prupe.1G436500 Prunus persica HOM05D000955 ORTHO05D001429 1.5e-07 59.7 78 44.9
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 1.9e-07 59.3 77 42.9
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 1.9e-07 59.3 76 44.7
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.9e-07 59.3 76 46.1
Cfa018536 Carpinus fangiana HOM05D000955 ORTHO05D001429 3.3e-07 58.5 77 46.8
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 3.3e-07 58.5 75 46.7
CiPaw.15G060000 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.3e-07 58.5 76 46.1
EL10Ac1g00552 Beta vulgaris HOM05D000955 ORTHO05D001429 4.3e-07 58.2 74 45.9
Gohir.D02G091500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.3e-07 58.2 74 45.9
Gohir.D06G016300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.3e-07 58.2 78 39.7
Gorai.005G102600 Gossypium raimondii HOM05D000955 ORTHO05D001429 4.3e-07 58.2 74 45.9
Gorai.010G019200 Gossypium raimondii HOM05D000955 ORTHO05D001429 4.3e-07 58.2 78 39.7
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 4.3e-07 58.2 98 37.8
Cfa018538 Carpinus fangiana HOM05D000955 ORTHO05D001429 5.6e-07 57.8 89 38.2
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 5.6e-07 57.8 76 44.7
Sed0014484 Sechium edule HOM05D000955 ORTHO05D001429 5.6e-07 57.8 55 54.5
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 5.6e-07 57.8 74 43.2
Duzib116G0476 Durio zibethinus HOM05D000955 ORTHO05D001429 7.3e-07 57.4 74 47.3
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 7.3e-07 57.4 78 43.6
Prupe.1G436800 Prunus persica HOM05D000955 ORTHO05D001429 7.3e-07 57.4 82 39.0
Prupe.1G437000 Prunus persica HOM05D000955 ORTHO05D001429 7.3e-07 57.4 82 39.0
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 9.5e-07 57.0 77 41.6
Cfa018540 Carpinus fangiana HOM05D000955 ORTHO05D001429 9.5e-07 57.0 80 41.2
Ciclev10003536m.g Citrus clementina HOM05D000955 ORTHO05D001429 9.5e-07 57.0 68 51.5
QL02p004928 Quercus lobata HOM05D000955 ORTHO05D001429 9.5e-07 57.0 75 44.0
QL02p005025 Quercus lobata HOM05D000955 ORTHO05D001429 9.5e-07 57.0 75 44.0
Sc26g0000770 Simmondsia chinensis HOM05D000955 ORTHO05D001429 1.2e-06 56.6 78 38.5
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.2e-06 56.6 73 46.6
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 1.2e-06 56.6 73 45.2
CSS0002475 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.6e-06 56.2 80 41.2
FAN27G3476 Fragaria x ananassa HOM05D017863 ORTHO05D020646 1.6e-06 56.2 82 41.5
Gohir.D05G263700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.6e-06 56.2 67 49.3
Gohir.D06G016200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.6e-06 56.2 78 39.7
Gorai.009G275500 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.6e-06 56.2 67 49.3
Gorai.010G019100 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.6e-06 56.2 78 39.7
Thecc.04G032100 Theobroma cacao HOM05D000955 ORTHO05D001429 1.6e-06 56.2 74 40.5
Thecc.08G009800 Theobroma cacao HOM05D000955 ORTHO05D001429 1.6e-06 56.2 78 39.7
vmacro21527 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 1.6e-06 56.2 54 50.0
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.1e-06 55.8 88 42.0
COL.COLO4_26491 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.1e-06 55.8 73 41.1
MELO3C016746.2 Cucumis melo HOM05D000955 ORTHO05D001429 2.1e-06 55.8 90 36.7
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 2.1e-06 55.8 74 45.9
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.1e-06 55.8 74 43.2
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 2.8e-06 55.5 79 44.3
Gohir.A06G017900 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.8e-06 55.5 78 38.5
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.8e-06 55.5 76 47.4
COL.COLO4_26501 Corchorus olitorius HOM05D000955 ORTHO05D001429 3.6e-06 55.1 85 38.8
FvH4_2g34500 Fragaria vesca HOM05D017863 ORTHO05D020646 3.6e-06 55.1 82 40.2
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.6e-06 55.1 77 44.2
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.6e-06 55.1 75 42.7
Thecc.08G009600 Theobroma cacao HOM05D000955 ORTHO05D001429 3.6e-06 55.1 73 39.7
Cfa018539 Carpinus fangiana HOM05D000955 ORTHO05D001429 4.7e-06 54.7 93 35.5
CiPaw.15G059500 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.7e-06 54.7 89 37.1
COL.COLO4_26488 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.7e-06 54.7 76 42.1
Potri.008G079132 Populus trichocarpa HOM05D000955 ORTHO05D001429 4.7e-06 54.7 79 41.8
Sc15g0003420 Simmondsia chinensis HOM05D000955 ORTHO05D001429 4.7e-06 54.7 78 38.5
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 6.2e-06 54.3 90 41.1
Ah.05g171940 Amaranthus hybridus HOM05D000955 ORTHO05D001429 6.2e-06 54.3 72 45.8
CSS0008676 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 6.2e-06 54.3 88 40.9
ClCG05G019810 Citrullus lanatus HOM05D000955 ORTHO05D001429 6.2e-06 54.3 90 37.8
COL.COLO4_26489 Corchorus olitorius HOM05D000955 ORTHO05D001429 6.2e-06 54.3 77 41.6
Gohir.A03G076800 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.2e-06 54.3 74 43.2
Manes.05G173400 Manihot esculenta HOM05D000955 ORTHO05D001429 6.2e-06 54.3 77 39.0
Atru.chr13.664 Acer truncatum HOM05D000955 ORTHO05D002259 8.1e-06 53.9 77 44.2
Atru.chr13.666 Acer truncatum HOM05D000955 ORTHO05D001429 8.1e-06 53.9 78 43.6
CAN.G445.5 Capsicum annuum HOM05D000955 ORTHO05D001429 8.1e-06 53.9 75 44.0
MELO3C010864.2 Cucumis melo HOM05D000955 ORTHO05D001429 8.1e-06 53.9 54 48.1
FvH4_2g34510 Fragaria vesca HOM05D017863 ORTHO05D020646 8.1e-06 53.9 77 41.6
Rhsim06G0049200 Rhododendron simsii HOM05D000955 ORTHO05D001429 8.1e-06 53.9 52 51.9


User provided reference genes

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