Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.2e-143 513.1 243 100.0
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 4.1e-128 461.5 244 88.9
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.4e-114 414.8 244 81.6
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.1e-112 410.2 254 79.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.4e-112 409.8 253 79.4
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.4e-112 409.8 253 79.4
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.9e-112 409.5 253 79.8
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 2.3e-110 402.5 247 80.6
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 8.7e-102 374.0 259 71.4
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 8.7e-102 374.0 259 71.4
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.2e-97 359.4 256 70.3
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.4e-97 357.8 259 69.1
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.1e-96 357.1 261 68.2
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.1e-96 357.1 259 69.1
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.4e-96 356.7 251 68.9
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 3.2e-96 355.5 250 70.0
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 9.3e-96 354.0 254 68.5
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.5e-95 352.1 255 70.2
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.3e-94 350.1 260 69.6
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.3e-94 350.1 250 68.4
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 2.3e-94 349.4 258 68.2
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 3.9e-94 348.6 245 71.0
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 3.9e-94 348.6 256 68.0
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.5e-93 346.7 258 66.3
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.6e-93 344.0 258 65.5
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.3e-92 343.6 242 70.7
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.3e-92 343.6 259 67.6
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.1e-91 340.5 252 67.9
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.8e-91 339.7 247 69.2
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.8e-91 339.7 255 67.5
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 2.4e-91 339.3 253 67.6
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 4.0e-91 338.6 255 65.9
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 6.9e-91 337.8 256 67.6
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.0e-90 336.3 243 68.7
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.6e-90 335.9 252 68.3
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.6e-90 335.9 256 66.0
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 5.8e-90 334.7 265 64.2
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.7e-89 333.2 175 87.4
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.9e-89 332.4 260 63.5
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 2.9e-89 332.4 286 61.2
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.8e-89 332.0 222 72.1
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 8.4e-89 330.9 258 65.5
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.1e-88 330.5 256 66.8
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.4e-88 330.1 252 68.7
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.9e-88 329.7 250 66.0
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.4e-88 329.3 215 73.5
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 3.2e-88 328.9 239 68.2
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 4.2e-88 328.6 253 65.2
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.4e-88 328.2 247 66.0
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.6e-87 326.6 251 65.7
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.1e-87 326.2 252 65.5
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.5e-87 325.5 239 67.8
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 7.9e-87 324.3 256 63.3
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 7.9e-87 324.3 247 63.6
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 7.9e-87 324.3 256 65.2
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.0e-86 323.9 256 62.9
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.0e-86 323.9 251 64.9
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.9e-86 322.0 245 68.6
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 6.7e-86 321.2 234 67.1
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 8.7e-86 320.9 245 67.8
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 5.6e-85 318.2 254 63.0
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 7.4e-85 317.8 255 62.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 7.4e-85 317.8 253 62.5
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 9.6e-85 317.4 245 64.5
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 2.1e-84 316.2 239 65.3
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 2.1e-84 316.2 239 65.3
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.8e-84 315.8 261 60.9
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 2.8e-84 315.8 255 63.9
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 4.8e-84 315.1 256 62.1
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 4.8e-84 315.1 267 61.0
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 4.8e-84 315.1 259 62.9
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 6.2e-84 314.7 261 60.9
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 6.2e-84 314.7 259 61.4
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 8.1e-84 314.3 261 61.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.1e-83 313.9 250 62.4
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 1.8e-83 313.2 256 60.5
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 3.1e-83 312.4 256 63.7
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 9.0e-83 310.8 258 58.5
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 2.0e-82 309.7 256 63.3
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.4e-82 308.9 247 61.5
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 4.5e-82 308.5 260 60.8
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 2.2e-81 306.2 256 60.5
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 4.9e-81 305.1 254 62.6
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-80 303.5 253 58.5
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.4e-80 303.5 247 63.2
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.4e-80 303.5 263 59.3
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.9e-80 303.1 252 59.1
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 4.2e-80 302.0 248 62.9
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 7.1e-80 301.2 261 59.4
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 7.1e-80 301.2 250 58.4
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.2e-79 300.4 253 58.5
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.6e-79 300.1 250 60.0
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 3.5e-79 298.9 256 59.4
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 4.6e-79 298.5 210 69.5
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 6.0e-79 298.1 253 59.3
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 6.0e-79 298.1 241 59.8
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 6.0e-79 298.1 240 58.8
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 6.0e-79 298.1 259 59.1
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 7.9e-79 297.7 254 60.2
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.8e-78 296.6 256 59.8
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 3.0e-78 295.8 177 75.7
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 5.1e-78 295.0 242 59.1
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 6.7e-78 294.7 250 58.4
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 8.7e-78 294.3 208 69.7
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 8.7e-78 294.3 239 59.0
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-77 292.7 258 58.5
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.3e-77 292.0 150 89.3
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.3e-76 290.4 240 60.4
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.6e-76 290.0 210 70.0
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 2.1e-76 289.7 246 57.3
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.1e-76 289.7 173 76.3
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.8e-76 289.3 210 69.5
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.7e-76 288.9 206 67.5
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 3.1e-75 285.8 206 66.5
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 5.3e-75 285.0 233 62.2
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.4e-74 282.3 241 61.4
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.4e-74 282.3 241 61.4
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 4.5e-74 282.0 246 58.9
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 8.4e-73 277.7 215 66.0
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 5.5e-72 275.0 173 73.4
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.2e-71 273.9 166 74.1
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.6e-71 273.5 248 55.6
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.1e-71 273.1 179 70.9
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.0e-70 270.8 239 60.3
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.0e-70 269.2 213 64.8
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 9.7e-69 264.2 255 55.3
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.0e-65 251.9 244 57.0
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 5.0e-65 251.9 169 73.4
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 6.5e-65 251.5 228 56.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.5e-65 251.5 257 52.5
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 4.6e-63 245.4 213 57.3
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.4e-62 243.8 259 53.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 4.8e-60 235.3 135 79.3
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.8e-59 233.4 152 73.7
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.9e-57 226.1 196 56.1
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 7.2e-56 221.5 163 63.2
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.8e-54 216.9 164 60.4
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 4.4e-53 212.2 236 46.6
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 7.4e-53 211.5 251 48.2
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.3e-52 210.7 147 64.6
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.7e-52 210.3 111 86.5
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 6.3e-52 208.4 165 57.6
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.4e-51 207.2 175 57.1
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.2e-50 204.1 256 46.1
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 3.0e-38 162.9 142 59.9
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.3e-36 155.2 216 44.0
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.0e-33 147.9 88 77.3
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 4.2e-32 142.5 84 78.6
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.4e-29 132.9 128 55.5
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 7.5e-29 131.7 102 59.8
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.8e-27 127.1 88 65.9
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 5.4e-27 125.6 213 32.4
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.6e-25 118.6 73 75.3
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 1.9e-24 117.1 63 85.7
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 6.8e-22 108.6 78 67.9
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 4.4e-21 105.9 141 37.6
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.7e-20 104.0 65 70.8
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.3e-20 102.1 67 67.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-17 94.7 86 52.3
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.1e-14 83.2 39 92.3
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 3.1e-14 83.2 48 72.9
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.6e-13 80.1 46 73.9
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-11 73.9 46 69.6
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.9e-11 73.9 46 69.6
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 4.1e-11 72.8 100 45.0
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.3e-08 62.8 43 65.1
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 6.8e-06 55.5 78 38.5
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 8.9e-06 55.1 36 58.3


User provided reference genes

Program Settings