Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.5e-275 952.2 473 100.0
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 1.9e-198 696.0 484 74.6
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.4e-193 679.9 484 74.6
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 8.2e-181 637.5 479 71.2
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.1e-174 617.1 475 69.3
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.1e-174 617.1 475 69.3
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.3e-174 615.5 475 69.1
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 9.7e-174 614.0 471 69.4
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 8.2e-173 610.9 475 68.8
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.8e-167 593.2 477 65.0
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 7.4e-166 587.8 471 66.0
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 1.4e-164 583.6 483 65.0
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 5.3e-164 581.6 476 64.5
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.2e-162 576.2 476 65.8
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.4e-161 573.5 463 65.7
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 5.5e-161 571.6 477 65.2
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 7.2e-161 571.2 479 64.5
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 4.8e-157 558.5 460 64.3
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 7.0e-156 554.7 478 64.6
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 7.0e-156 554.7 468 63.0
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.0e-155 553.1 479 64.3
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.0e-155 553.1 462 64.5
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.9e-155 551.6 479 64.1
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.0e-154 550.8 490 60.8
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.2e-152 543.9 445 64.7
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 7.7e-147 524.6 462 61.3
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.7e-146 523.5 443 63.7
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.2e-144 517.3 432 62.5
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 8.0e-144 514.6 481 60.7
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 8.8e-143 511.1 478 57.3
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.5e-142 510.4 474 60.1
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 9.8e-142 507.7 476 58.8
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.4e-140 503.1 439 62.6
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 3.5e-139 499.2 477 58.1
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 7.7e-139 498.0 439 63.3
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 2.5e-137 493.0 490 56.1
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 4.2e-137 492.3 476 60.3
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 7.2e-137 491.5 489 56.2
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 3.6e-136 489.2 444 61.0
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 1.8e-135 486.9 382 67.5
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.8e-135 486.9 475 58.1
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 5.2e-135 485.3 498 55.4
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 8.9e-135 484.6 416 63.2
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.0e-134 483.4 416 63.0
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 4.4e-134 482.3 416 62.7
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.7e-133 479.2 481 56.5
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 1.1e-132 477.6 480 56.7
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 2.4e-132 476.5 504 54.2
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 7.0e-132 474.9 479 56.4
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 7.0e-132 474.9 498 53.8
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.1e-129 467.6 502 53.4
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.5e-129 467.2 478 55.2
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 2.1e-128 463.4 477 56.4
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 2.1e-128 463.4 475 57.1
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 2.8e-128 463.0 432 57.6
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 4.7e-128 462.2 494 53.6
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 6.1e-128 461.8 444 58.6
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.4e-127 460.7 451 57.0
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 8.9e-127 458.0 471 55.8
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.5e-126 457.2 471 55.6
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.7e-125 453.8 492 53.3
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 3.7e-125 452.6 477 53.9
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 8.3e-125 451.4 479 53.4
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.4e-124 450.7 485 53.8
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 3.2e-124 449.5 472 55.5
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 4.6e-123 445.7 476 54.6
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 6.0e-123 445.3 468 55.8
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 6.0e-123 445.3 402 59.0
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 3.9e-122 442.6 476 54.4
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 9.5e-121 438.0 457 52.5
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.3e-119 433.3 437 57.4
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 4.0e-119 432.6 436 55.5
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 2.0e-118 430.3 416 56.2
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.6e-118 429.9 450 54.7
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.7e-117 427.2 479 50.1
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 2.9e-117 426.4 434 57.1
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 5.0e-114 415.6 477 51.2
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 5.0e-114 415.6 469 50.5
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 1.1e-113 414.5 462 51.3
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.9e-113 413.7 486 49.6
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 7.3e-113 411.8 484 51.0
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 7.3e-113 411.8 410 56.6
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 8.1e-112 408.3 475 51.2
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 8.1e-112 408.3 403 55.3
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 5.2e-111 405.6 408 56.1
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 6.8e-111 405.2 414 54.1
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 5.8e-110 402.1 399 54.9
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 2.2e-109 400.2 476 50.4
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 2.2e-109 400.2 489 51.7
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 4.9e-109 399.1 469 50.7
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 4.9e-109 399.1 462 50.2
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.1e-108 396.0 455 51.6
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 9.2e-108 394.8 447 50.8
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 9.5e-105 384.8 468 49.1
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 9.5e-105 384.8 353 59.8
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 4.4e-102 375.9 475 48.0
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 7.6e-102 375.2 409 52.8
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 9.9e-102 374.8 417 50.6
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 2.1e-99 367.1 407 51.1
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 7.8e-99 365.2 496 44.4
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 3.0e-98 363.2 496 44.4
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.4e-95 354.4 438 47.5
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 5.8e-94 349.0 393 53.4
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 5.4e-92 342.4 395 52.7
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.2e-91 341.3 469 42.6
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.0e-90 338.2 403 48.9
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.6e-89 332.4 299 58.2
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 9.9e-86 321.6 501 41.3
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.3e-85 321.2 501 41.7
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.7e-85 320.9 498 40.6
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 2.2e-85 320.5 199 78.4
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 2.4e-84 317.0 505 40.6
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 2.1e-83 313.9 500 41.2
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 7.9e-83 312.0 397 47.9
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 7.9e-83 312.0 500 41.2
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 1.3e-82 311.2 496 41.1
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.6e-80 304.3 202 75.2
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 2.4e-79 300.4 239 63.6
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 3.1e-79 300.1 470 40.6
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.2e-78 298.1 477 41.5
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 1.2e-75 288.1 493 39.1
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 2.1e-72 277.3 394 41.1
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.1e-72 277.3 345 44.1
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.4e-71 273.9 380 45.3
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 5.3e-71 272.7 380 45.0
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.9e-71 272.3 392 41.8
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.9e-69 266.9 440 37.3
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 7.4e-65 252.3 395 40.5
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.3e-63 246.1 498 34.5
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.5e-62 243.0 413 39.0
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 4.2e-60 236.5 193 61.1
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.2e-60 235.7 405 39.5
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 2.1e-59 234.2 417 37.4
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.0e-58 231.9 411 38.0
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 6.3e-56 222.6 422 35.5
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 6.5e-53 212.6 161 64.6
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.5e-52 210.7 387 37.7
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.6e-51 206.8 465 33.5
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 3.9e-50 203.4 152 67.8
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 3.9e-50 203.4 152 67.8
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.6e-43 181.4 167 56.3
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.6e-43 180.3 168 56.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 3.9e-42 176.8 167 54.5
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.6e-38 164.9 438 30.1
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 3.5e-38 163.7 109 69.7
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.2e-35 155.2 161 47.2
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.1e-35 154.5 391 30.4
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 6.1e-35 152.9 283 40.6
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 6.1e-35 152.9 283 40.6
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.1e-35 152.9 149 54.4
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.3e-33 147.1 336 34.2
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 7.0e-31 139.4 339 32.7
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.1e-20 105.5 267 32.2
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 2.0e-17 94.7 108 50.9
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 6.1e-11 73.2 120 34.2
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.4e-09 67.4 110 31.8


User provided reference genes

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