Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G424900 Prunus persica HOM05D002570 ORTHO05D002689 1.0e-47 193.0 90 100.0
MD15G1072300 Malus domestica HOM05D002570 ORTHO05D002689 1.5e-27 125.9 89 67.4
RcHm_v2.0_Chr6g0309331 Rosa chinensis HOM05D002570 ORTHO05D002689 3.6e-21 104.8 92 54.3
MD15G1072200 Malus domestica HOM05D003189 ORTHO05D003449 8.9e-20 100.1 70 65.7
CSS0011900 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.3e-18 96.3 90 48.9
Thecc.08G091100 Theobroma cacao HOM05D002570 ORTHO05D002689 6.4e-18 94.0 84 53.6
vmacro21448 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 6.4e-18 94.0 91 50.5
GSVIVG01009363001 Vitis vinifera HOM05D002570 ORTHO05D002689 6.4e-18 94.0 97 48.5
Nitab4.5_0011511g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.1e-17 90.5 84 46.4
FAN15G3341 Fragaria x ananassa HOM05D002570 ORTHO05D002689 2.7e-16 88.6 94 51.1
Nitab4.5_0000934g0050 Nicotiana tabacum HOM05D002570 ORTHO05D002689 2.7e-16 88.6 84 45.2
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 3.5e-16 88.2 92 48.9
Hma1.2p1_0819F.1_g223830 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 6.0e-16 87.4 89 46.1
Manes.18G044800 Manihot esculenta HOM05D002570 ORTHO05D002689 7.8e-16 87.0 84 50.0
QL12p037631 Quercus lobata HOM05D002570 ORTHO05D002689 7.8e-16 87.0 87 47.1
Cpa.g.sc21.103 Carica papaya HOM05D002570 ORTHO05D002689 1.0e-15 86.7 90 45.6
Peaxi162Scf00081g01321 Petunia axillaris HOM05D002570 ORTHO05D002689 1.0e-15 86.7 84 46.4
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.0e-15 86.7 89 43.8
Duzib116G0240 Durio zibethinus HOM05D002570 ORTHO05D002689 3.0e-15 85.1 84 50.0
Rhsim07G0221300 Rhododendron simsii HOM05D002570 ORTHO05D002689 3.0e-15 85.1 91 46.2
TWI56G1429 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 6.6e-15 84.0 88 42.0
Gohir.A02G081500 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.1e-14 83.2 88 50.0
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.1e-14 83.2 83 47.0
Gorai.005G099800 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.5e-14 82.8 88 48.9
Glyma.13G068400 Glycine max HOM05D002570 ORTHO05D002689 2.5e-14 82.0 99 43.4
PGSC0003DMG400021530 Solanum tuberosum HOM05D002570 ORTHO05D002689 2.5e-14 82.0 79 46.8
CiPaw.07G176800 Carya illinoinensis HOM05D002570 ORTHO05D002689 4.3e-14 81.3 90 46.7
Gohir.D02G089132 Gossypium hirsutum HOM05D002570 ORTHO05D002689 5.6e-14 80.9 88 46.6
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 5.6e-14 80.9 90 44.4
vmacro22064 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 5.6e-14 80.9 90 45.6
PGSC0003DMG400000865 Solanum tuberosum HOM05D002570 ORTHO05D002689 7.3e-14 80.5 89 44.9
Glyma.19G015500 Glycine max HOM05D002570 ORTHO05D002689 9.6e-14 80.1 90 43.3
Phvul.004G022100 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 1.2e-13 79.7 101 42.6
Psat1g078440 Pisum sativum HOM05D002570 ORTHO05D002689 1.2e-13 79.7 70 48.6
Migut.N02768 Erythranthe guttata HOM05D002570 ORTHO05D002689 1.6e-13 79.3 88 39.8
Manes.05G180500 Manihot esculenta HOM05D002570 ORTHO05D002689 1.6e-13 79.3 88 45.5
Duzib041G0717 Durio zibethinus HOM05D002570 ORTHO05D002689 2.1e-13 79.0 84 47.6
TPR.G32582 Trifolium pratense HOM05D002570 ORTHO05D002689 2.8e-13 78.6 70 45.7
TAR381G1276 Trochodendron aralioides HOM05D001633 ORTHO05D002880 2.8e-13 78.6 72 50.0
Cc10_g05610 Coffea canephora HOM05D002570 ORTHO05D002689 3.6e-13 78.2 85 40.0
Sc02g0007790 Simmondsia chinensis HOM05D002570 ORTHO05D002689 4.7e-13 77.8 90 41.1
Atru.chr13.811 Acer truncatum HOM05D002570 ORTHO05D002689 8.1e-13 77.0 90 44.4
Eucgr.F00117 Eucalyptus grandis HOM05D002570 ORTHO05D002689 8.1e-13 77.0 90 45.6
Lj2g0012585 Lotus japonicus HOM05D002570 ORTHO05D002689 8.1e-13 77.0 70 51.4
Carub.0008s0556 Capsella rubella HOM05D002570 ORTHO05D002689 3.1e-12 75.1 89 38.2
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 3.1e-12 75.1 83 41.0
Medtr6g008680 Medicago truncatula HOM05D002570 ORTHO05D002689 4.0e-12 74.7 80 45.0
Sopen01g006400 Solanum pennellii HOM05D000017 ORTHO05D000013 4.0e-12 74.7 90 42.2
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 5.3e-12 74.3 60 58.3
Migut.C00496 Erythranthe guttata HOM05D002570 ORTHO05D002689 6.9e-12 73.9 87 36.8
Sc05g0001400 Simmondsia chinensis HOM05D002570 ORTHO05D002689 6.9e-12 73.9 82 46.3
BcaB07g30593 Brassica carinata HOM05D002570 ORTHO05D002689 9.0e-12 73.6 89 36.0
CARHR180760 Cardamine hirsuta HOM05D002570 ORTHO05D002689 1.2e-11 73.2 89 37.1
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 1.2e-11 73.2 56 57.1
COL.COLO4_28527 Corchorus olitorius HOM05D002570 ORTHO05D002689 1.5e-11 72.8 64 56.2
Gohir.D05G211800 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.5e-11 72.8 86 45.3
Aa31LG9G13240 Aethionema arabicum HOM05D002570 ORTHO05D002689 2.0e-11 72.4 73 45.2
PGR083G0844 Punica granatum HOM05D002570 ORTHO05D002689 2.0e-11 72.4 71 50.7
Sp2g07930 Schrenkiella parvula HOM05D002570 ORTHO05D002689 2.0e-11 72.4 93 37.6
THA.LOC104812588 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 2.0e-11 72.4 91 41.8
BcaC06g31719 Brassica carinata HOM05D002570 ORTHO05D002689 2.6e-11 72.0 89 39.3
Thhalv10003296m.g Eutrema salsugineum HOM05D002570 ORTHO05D002689 2.6e-11 72.0 71 42.3
A06p48010 Brassica napus HOM05D002570 ORTHO05D002689 3.4e-11 71.6 89 38.2
BraA06t27671Z Brassica rapa HOM05D002570 ORTHO05D002689 3.4e-11 71.6 89 38.2
A02p27670 Brassica napus HOM05D002570 ORTHO05D002689 4.4e-11 71.2 89 34.8
C07p25720 Brassica napus HOM05D002570 ORTHO05D002689 4.4e-11 71.2 89 39.3
BraA02t07806Z Brassica rapa HOM05D002570 ORTHO05D002689 4.4e-11 71.2 89 34.8
Hund09510 Selenicereus undatus HOM05D002570 ORTHO05D002689 4.4e-11 71.2 81 39.5
AT5G43150 Arabidopsis thaliana HOM05D002570 ORTHO05D002689 5.8e-11 70.9 89 33.7
BcaC06g34677 Brassica carinata HOM05D002570 ORTHO05D002689 5.8e-11 70.9 89 38.2
BolC7t43091H Brassica oleracea HOM05D002570 ORTHO05D002689 5.8e-11 70.9 89 38.2
MELO3C032377.2 Cucumis melo HOM05D002570 ORTHO05D002689 5.8e-11 70.9 83 48.2
THA.LOC104804738 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 5.8e-11 70.9 68 44.1
THA.LOC104825766 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 1.7e-10 69.3 86 36.0
Gohir.A05G208300 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.2e-10 68.9 88 43.2
Ciclev10002925m.g Citrus clementina HOM05D002570 ORTHO05D002689 2.9e-10 68.6 100 41.0
Hma1.2p1_0177F.1_g077950 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 3.8e-10 68.2 77 44.2
Lalb_Chr02g0159831 Lupinus albus HOM05D002570 ORTHO05D002689 3.8e-10 68.2 61 45.9
Sed0024363 Sechium edule HOM05D002570 ORTHO05D002689 3.8e-10 68.2 91 37.4
Hund02836 Selenicereus undatus HOM05D002570 ORTHO05D002689 3.8e-10 68.2 60 43.3
Gorai.009G218400 Gossypium raimondii HOM05D002570 ORTHO05D002689 8.4e-10 67.0 88 44.3
Potri.002G119700 Populus trichocarpa HOM05D002570 ORTHO05D002689 8.4e-10 67.0 64 50.0
Aqoxy6G02718 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 1.4e-09 66.2 82 39.0
Sabra02G0094200 Salix brachista HOM05D002570 ORTHO05D002689 1.4e-09 66.2 64 48.4
AUR62032321 Chenopodium quinoa HOM05D002570 ORTHO05D002689 1.9e-09 65.9 79 35.4
SalBow7G3896 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.9e-09 65.9 56 48.2
Solyc04g078030.3 Solanum lycopersicum HOM05D002570 ORTHO05D002689 1.9e-09 65.9 72 44.4
MBI16_g22819_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 2.4e-09 65.5 88 37.5
Lsat_1_v5_gn_4_130881 Lactuca sativa HOM05D002570 ORTHO05D002689 3.2e-09 65.1 78 41.0
Sopen04g031620 Solanum pennellii HOM05D002570 ORTHO05D002689 3.2e-09 65.1 72 44.4
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 9.3e-09 63.5 89 39.3
Sc15g0005580 Simmondsia chinensis HOM05D002570 ORTHO05D002689 9.3e-09 63.5 78 39.7
Nn5g30532 Nelumbo nucifera HOM05D002570 ORTHO05D002689 1.2e-08 63.2 55 52.7
EL10Ac5g10534 Beta vulgaris HOM05D002570 ORTHO05D002689 1.6e-08 62.8 76 36.8
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.6e-08 62.8 83 43.4
HPP92_012494 Vanilla planifolia HOM05D002570 ORTHO05D002689 3.5e-08 61.6 71 42.3
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 7.8e-08 60.5 83 38.6
unitig_578.g16139 Utricularia gibba HOM05D002570 ORTHO05D002689 7.8e-08 60.5 68 42.6
Medtr2g105430 Medicago truncatula HOM05D002570 ORTHO05D002689 1.3e-07 59.7 74 43.2
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 1.7e-07 59.3 58 51.7
ATR0030G054 Amborella trichopoda HOM05D002570 ORTHO05D002689 1.7e-07 59.3 80 37.5
Aqoxy5G00897 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 1.7e-07 59.3 36 66.7
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 1.7e-07 59.3 73 42.5
SEGI_02946 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 1.7e-07 59.3 61 45.9
arahy.Tifrunner.gnm1.ann1.CN16C1 Arachis hypogaea HOM05D002570 ORTHO05D002689 3.0e-07 58.5 55 40.0
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 3.0e-07 58.5 81 39.5
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 3.9e-07 58.2 80 40.0
arahy.Tifrunner.gnm1.ann1.N56UGC Arachis hypogaea HOM05D002570 ORTHO05D002689 5.1e-07 57.8 55 40.0
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 5.1e-07 57.8 73 42.5
unitig_22.g6281 Utricularia gibba HOM05D002570 ORTHO05D002689 6.6e-07 57.4 70 42.9
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 8.7e-07 57.0 58 48.3
Psat5g308160 Pisum sativum HOM05D002570 ORTHO05D002689 8.7e-07 57.0 55 49.1
unitig_27.g24959 Utricularia gibba HOM05D002570 ORTHO05D002689 8.7e-07 57.0 58 44.8
Zm00001eb007320 Zea mays HOM05D002570 ORTHO05D002689 8.7e-07 57.0 53 41.5
Zm00001eb400610 Zea mays HOM05D002570 ORTHO05D002689 8.7e-07 57.0 51 45.1
Zm00001eb400620 Zea mays HOM05D002570 ORTHO05D002689 8.7e-07 57.0 51 45.1
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 1.1e-06 56.6 83 39.8
CDE07G0252 Ceratophyllum demersum HOM05D002570 ORTHO05D002689 1.1e-06 56.6 58 39.7
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 1.1e-06 56.6 73 41.1
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 1.1e-06 56.6 73 41.1
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 1.1e-06 56.6 73 41.1
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 1.1e-06 56.6 92 39.1
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.5e-06 56.2 72 40.3
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.5e-06 56.2 72 40.3
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 1.5e-06 56.2 73 41.1
Os07g0115500 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 1.5e-06 56.2 45 53.3
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 1.5e-06 56.2 73 39.7
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 1.9e-06 55.8 58 50.0
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.9e-06 55.8 72 40.3
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 1.9e-06 55.8 74 44.6
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 1.9e-06 55.8 91 31.9
SalBow6G3045 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.9e-06 55.8 61 44.3
SalBow8G2749 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.9e-06 55.8 61 44.3
GSVIVG01016063001 Vitis vinifera HOM05D002570 ORTHO05D002689 1.9e-06 55.8 73 43.8
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 2.5e-06 55.5 73 38.4
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 2.5e-06 55.5 83 38.6
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 2.5e-06 55.5 80 37.5
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 2.5e-06 55.5 73 42.5
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.3e-06 55.1 72 41.7
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.3e-06 55.1 72 41.7
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 3.3e-06 55.1 72 43.1
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 3.3e-06 55.1 72 43.1
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 4.3e-06 54.7 79 38.0
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 4.3e-06 54.7 81 39.5
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 5.6e-06 54.3 84 36.9
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 7.3e-06 53.9 55 47.3
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 7.3e-06 53.9 55 47.3
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 7.3e-06 53.9 80 37.5
SEGI_16988 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 7.3e-06 53.9 63 52.4
HPP92_015713 Vanilla planifolia HOM05D002570 ORTHO05D002689 7.3e-06 53.9 78 33.3
CANSAT64G2315 Cannabis sativa HOM05D002570 ORTHO05D002689 9.6e-06 53.5 69 40.6
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 9.6e-06 53.5 73 38.4
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 9.6e-06 53.5 62 41.9
Zm00001eb058270 Zea mays HOM05D002570 ORTHO05D002689 9.6e-06 53.5 47 48.9
Zm00001eb214250 Zea mays HOM05D002570 ORTHO05D002689 9.6e-06 53.5 47 48.9


User provided reference genes

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