Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.2e-206 723.0 378 100.0
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 2.0e-158 562.8 384 77.3
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 9.8e-153 543.9 385 74.0
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.7e-152 543.1 384 75.0
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 1.1e-151 540.4 390 74.4
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.1e-151 538.5 385 74.3
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 9.2e-151 537.3 390 74.1
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.0e-150 536.2 390 73.8
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 3.5e-134 482.3 384 69.0
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 3.5e-134 482.3 384 69.0
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.7e-133 479.9 383 68.1
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.9e-133 478.8 381 66.7
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.1e-127 460.7 379 65.4
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 8.7e-125 451.1 385 64.7
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.6e-121 439.5 383 62.1
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 9.3e-119 431.0 377 63.1
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 8.1e-115 417.9 390 60.8
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 2.6e-113 412.9 378 63.5
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 9.9e-113 411.0 372 61.8
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 4.9e-112 408.7 382 59.7
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 9.3e-111 404.4 367 60.2
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.2e-110 404.1 372 60.8
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.3e-109 399.8 376 59.8
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 5.1e-109 398.7 377 60.2
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 4.3e-108 395.6 377 59.4
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 4.3e-108 395.6 379 61.2
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 5.3e-106 388.7 394 57.9
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.7e-104 383.6 380 59.5
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.9e-104 382.9 371 59.0
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 5.5e-103 378.6 373 61.7
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.2e-102 377.5 387 56.3
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 2.1e-102 376.7 397 56.4
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 2.3e-101 373.2 404 55.7
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 4.3e-100 369.0 396 55.6
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.8e-98 363.6 348 59.5
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.6e-97 359.8 395 55.9
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.6e-97 359.8 395 55.9
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 1.3e-96 357.5 402 53.7
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.2e-94 350.9 392 55.9
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.1e-94 350.1 399 53.6
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.1e-92 344.4 367 53.7
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 4.2e-87 325.9 382 49.2
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 4.2e-87 325.9 383 53.5
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 9.4e-87 324.7 388 53.4
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 1.2e-86 324.3 457 45.5
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 2.7e-86 323.2 409 50.4
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 6.1e-86 322.0 375 52.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.4e-85 320.9 385 51.9
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 3.3e-84 316.2 386 47.9
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.3e-83 314.3 385 53.2
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.8e-83 313.2 386 48.4
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.7e-83 312.8 375 51.2
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.8e-82 310.5 382 47.9
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.4e-82 310.1 396 50.0
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 6.9e-82 308.5 388 52.6
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.0e-81 307.0 391 51.4
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.0e-80 304.7 395 48.1
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 1.3e-80 304.3 390 46.9
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.3e-80 304.3 392 48.0
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 6.5e-80 302.0 392 48.0
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 6.5e-80 302.0 392 48.0
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.4e-79 300.8 391 46.3
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.9e-79 300.4 403 46.4
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 4.2e-79 299.3 439 49.7
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 4.2e-79 299.3 392 46.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.6e-78 297.4 392 45.9
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.1e-78 297.0 402 46.8
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.7e-78 296.6 382 46.3
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.1e-78 295.4 387 49.4
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.4e-77 294.3 347 52.2
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.4e-77 294.3 386 47.7
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 5.2e-77 292.4 391 45.3
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 6.7e-77 292.0 395 45.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.5e-76 290.8 392 45.7
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.3e-76 289.7 394 45.7
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 7.4e-76 288.5 392 45.4
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 9.7e-76 288.1 394 45.7
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 2.8e-75 286.6 388 46.1
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 3.7e-75 286.2 394 44.4
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 1.1e-74 284.6 369 48.8
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.4e-74 284.3 388 46.9
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-74 284.3 399 46.4
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 1.6e-73 280.8 434 45.9
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.6e-73 280.8 395 44.1
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.6e-73 280.8 404 46.3
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 2.6e-73 280.0 393 46.3
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 2.6e-73 280.0 389 45.0
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.0e-72 278.1 382 45.8
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 7.2e-71 271.9 395 46.6
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 2.1e-70 270.4 365 47.9
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 4.7e-70 269.2 384 46.4
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 5.2e-69 265.8 367 48.5
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 2.8e-67 260.0 408 40.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.2e-65 254.6 368 43.5
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 5.5e-63 245.7 385 45.2
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.8e-61 240.7 412 42.7
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 2.0e-60 237.3 206 60.2
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 3.7e-59 233.0 201 62.7
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.8e-58 230.7 361 44.3
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 5.4e-58 229.2 393 44.0
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 2.3e-56 223.8 313 46.6
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 3.6e-54 216.5 361 40.4
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.8e-53 214.2 376 38.8
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 6.8e-53 212.2 390 39.5
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.2e-52 211.5 300 47.7
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 3.7e-51 206.5 399 38.8
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.4e-50 203.8 220 58.2
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 9.2e-50 201.8 387 39.3
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 9.2e-50 201.8 220 57.7
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 2.7e-49 200.3 370 39.5
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 5.0e-48 196.1 378 37.8
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.2e-46 191.4 201 54.7
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.4e-45 188.0 200 52.5
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 8.9e-45 185.3 350 38.6
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.5e-44 184.5 200 53.0
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 3.5e-41 173.3 201 52.2
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 5.6e-39 166.0 133 56.4
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 6.2e-38 162.5 368 34.0
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 6.8e-37 159.1 368 34.5
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 8.9e-37 158.7 365 32.6
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 2.0e-36 157.5 138 62.3
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 4.9e-35 152.9 362 33.1
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 7.0e-34 149.1 257 41.6
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.6e-33 147.9 369 33.9
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 1.7e-32 144.4 374 33.2
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 2.3e-29 134.0 112 67.0
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.1e-26 125.2 186 43.0
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 4.3e-23 113.2 118 60.2
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.2e-19 100.9 165 38.2
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.9e-19 99.8 164 37.2
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 7.1e-18 95.9 170 37.6
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 2.3e-16 90.9 362 28.5
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.5e-15 87.4 162 34.6
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 3.3e-15 87.0 155 36.1
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.7e-14 83.2 160 32.5
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 5.2e-13 79.7 156 32.7
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 1.5e-12 78.2 98 41.8
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 4.9e-11 73.2 368 25.5
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 160 31.2
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 160 31.2
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 160 31.2
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 160 31.2
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 160 31.2
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-08 65.1 160 30.6
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-08 65.1 160 30.0
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-08 64.3 160 30.6
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 3.0e-08 63.9 100 47.0
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 6.2e-06 56.2 167 31.1


User provided reference genes

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