Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 7.2e-59 230.3 113 100.0
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 2.1e-34 149.1 108 73.1
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 3.7e-31 138.3 113 67.3
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 4.9e-31 137.9 103 67.0
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.8e-30 136.0 116 70.7
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 2.4e-30 135.6 110 67.3
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 3.1e-30 135.2 116 72.4
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 3.1e-30 135.2 116 72.4
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 4.1e-30 134.8 115 70.4
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 4.1e-30 134.8 104 70.2
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 5.4e-30 134.4 106 67.9
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 9.2e-30 133.7 115 69.6
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 4.5e-29 131.3 108 61.1
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 5.9e-29 131.0 114 64.9
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 2.3e-28 129.0 105 69.5
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 2.3e-28 129.0 108 62.0
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 2.9e-28 128.6 104 68.3
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 5.0e-28 127.9 106 67.9
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 6.6e-28 127.5 85 71.8
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 1.1e-27 126.7 104 67.3
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 1.1e-27 126.7 113 64.6
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 1.1e-27 126.7 115 69.6
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 3.3e-27 125.2 110 65.5
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 9.5e-27 123.6 109 59.6
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 1.2e-26 123.2 104 63.5
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 1.6e-26 122.9 110 63.6
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 2.1e-26 122.5 112 63.4
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 2.8e-26 122.1 110 61.8
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 3.6e-26 121.7 104 63.5
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 4.7e-26 121.3 104 61.5
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 4.7e-26 121.3 108 63.9
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 1.4e-25 119.8 106 60.4
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 2.3e-25 119.0 108 65.7
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 4.0e-25 118.2 107 61.7
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 5.2e-25 117.9 116 59.5
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 6.8e-25 117.5 110 60.0
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 6.8e-25 117.5 112 61.6
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 1.5e-24 116.3 90 65.6
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 2.6e-24 115.5 108 60.2
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 4.4e-24 114.8 102 61.8
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 5.7e-24 114.4 105 59.0
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 9.8e-24 113.6 101 61.4
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 1.3e-23 113.2 105 59.0
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 1.7e-23 112.8 109 59.6
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 2.2e-23 112.5 105 59.0
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 2.2e-23 112.5 111 59.5
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 6.4e-23 110.9 110 58.2
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 1.4e-22 109.8 110 55.5
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 3.2e-22 108.6 109 56.9
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 3.2e-22 108.6 106 59.4
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 5.4e-22 107.8 106 55.7
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 5.4e-22 107.8 107 54.2
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 7.0e-22 107.5 95 61.1
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.2e-21 106.7 106 53.8
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.6e-21 106.3 95 60.0
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 2.0e-21 105.9 72 73.6
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.7e-21 105.5 95 60.0
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 3.5e-21 105.1 110 54.5
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 4.6e-21 104.8 108 53.7
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 5.9e-21 104.4 94 59.6
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 7.8e-21 104.0 107 59.8
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.0e-20 103.6 106 54.7
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.0e-20 103.6 106 54.7
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.0e-20 103.6 106 54.7
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 1.0e-20 103.6 106 57.5
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 1.3e-20 103.2 95 57.9
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 3.0e-20 102.1 114 51.8
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 3.9e-20 101.7 115 53.9
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 8.6e-20 100.5 107 51.4
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 1.1e-19 100.1 103 52.4
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 1.9e-19 99.4 108 53.7
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 2.5e-19 99.0 109 56.9
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 4.3e-19 98.2 112 52.7
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 4.3e-19 98.2 85 61.2
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 5.6e-19 97.8 112 56.2
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 7.3e-19 97.4 109 56.0
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 9.5e-19 97.1 105 51.4
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 3.6e-18 95.1 75 62.7
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 8.0e-18 94.0 113 54.9
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 5.2e-17 91.3 89 57.3
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 1.5e-16 89.7 100 54.0
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 2.0e-16 89.4 77 61.0
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 9.8e-16 87.0 89 57.3
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 5.4e-14 81.3 114 51.8
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 7.0e-14 80.9 86 50.0
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 1.5e-11 73.2 83 49.4
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 4.3e-11 71.6 67 53.7
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 5.2e-09 64.7 58 58.6
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 5.2e-09 64.7 47 61.7
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 1.5e-08 63.2 49 61.2
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 3.4e-08 62.0 49 59.2
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 3.4e-08 62.0 60 51.7
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 4.4e-08 61.6 83 47.0
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 1.3e-07 60.1 99 41.4
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 1.7e-07 59.7 68 47.1
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 1.7e-07 59.7 55 54.5
QL06p038982 Quercus lobata HOM05D007433 ORTHO05D009199 2.2e-07 59.3 74 43.2
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 6.4e-07 57.8 54 53.7
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 6.4e-07 57.8 95 37.9
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 8.3e-07 57.4 78 42.3
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 1.1e-06 57.0 86 45.3
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.4e-06 56.6 69 43.5
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.4e-06 55.8 73 42.5
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.4e-06 55.8 84 40.5
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.4e-06 55.8 57 47.4
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.4e-06 55.8 54 50.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.2e-06 55.5 56 51.8
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.2e-06 55.5 45 57.8
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.2e-06 55.5 45 57.8
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.2e-06 55.5 45 57.8
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 3.2e-06 55.5 54 44.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.2e-06 55.5 55 50.9
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 4.1e-06 55.1 49 49.0
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 4.1e-06 55.1 56 48.2
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 4.1e-06 55.1 58 46.6
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 4.1e-06 55.1 48 52.1
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.4e-06 54.7 61 47.5
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 5.4e-06 54.7 64 40.6
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 7.1e-06 54.3 60 41.7
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 7.1e-06 54.3 60 41.7
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.1e-06 54.3 74 37.8
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 7.1e-06 54.3 54 48.1
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 7.1e-06 54.3 42 59.5
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 9.2e-06 53.9 48 52.1
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 9.2e-06 53.9 52 44.2
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 9.2e-06 53.9 48 50.0
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 9.2e-06 53.9 77 44.2
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.2e-06 53.9 74 37.8
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 9.2e-06 53.9 44 54.5
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 9.2e-06 53.9 76 40.8


User provided reference genes

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