Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 3.5e-222 774.6 385 100.0
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 8.4e-200 700.3 387 89.7
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 3.0e-197 691.8 387 88.6
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 2.4e-183 645.6 385 83.9
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.2e-183 644.8 388 84.0
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.1e-182 642.5 388 83.5
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.1e-182 642.5 389 83.3
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.5e-180 635.6 402 80.8
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 2.5e-180 635.6 386 82.4
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 2.2e-176 622.5 387 80.9
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.2e-175 618.2 385 78.7
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 4.2e-175 618.2 385 78.7
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 1.6e-174 616.3 385 79.0
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 2.7e-174 615.5 387 78.6
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 4.6e-174 614.8 403 78.4
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 3.0e-173 612.1 388 78.1
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.9e-173 611.7 385 77.9
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 6.7e-173 610.9 387 78.3
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 1.9e-172 609.4 389 78.7
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 2.1e-171 605.9 388 77.6
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 5.3e-170 601.3 388 76.5
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 9.0e-170 600.5 387 78.0
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 9.0e-170 600.5 388 78.1
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 1.5e-169 599.7 387 76.5
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 2.0e-169 599.4 389 78.4
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 5.8e-169 597.8 385 77.1
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 8.4e-168 594.0 404 76.0
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.1e-167 593.6 387 77.0
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 1.9e-167 592.8 387 76.5
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.2e-166 590.1 387 76.7
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 3.5e-166 588.6 387 75.2
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 1.0e-165 587.0 388 75.5
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 1.9e-164 582.8 393 75.3
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 4.3e-164 581.6 392 74.0
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 9.6e-164 580.5 387 76.7
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 3.7e-163 578.6 412 72.1
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 2.0e-161 572.8 385 75.3
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.3e-160 570.1 401 74.3
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 5.0e-160 568.2 388 73.5
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 1.9e-159 566.2 388 74.7
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 5.5e-159 564.7 388 74.2
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 7.2e-159 564.3 388 74.7
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 9.3e-159 563.9 414 70.3
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 9.3e-159 563.9 385 73.5
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.0e-157 560.5 388 73.5
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 1.0e-157 560.5 389 73.8
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.3e-157 560.1 385 73.0
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 3.9e-157 558.5 388 72.9
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 5.1e-157 558.1 389 72.0
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 9.7e-156 553.9 385 72.5
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 2.0e-153 546.2 390 70.3
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 4.5e-153 545.0 388 71.1
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 2.9e-152 542.3 389 69.2
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.4e-151 540.0 416 68.3
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 4.2e-151 538.5 388 70.9
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 9.4e-151 537.3 390 69.7
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-150 537.0 346 77.2
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 2.7e-150 535.8 389 71.2
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 1.8e-149 533.1 393 69.2
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 2.0e-148 529.6 385 69.4
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 2.0e-148 529.6 387 69.3
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 2.0e-148 529.6 389 72.0
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 2.6e-148 529.3 387 69.8
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 3.3e-148 528.9 388 68.6
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 1.3e-147 526.9 394 67.8
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 3.7e-147 525.4 387 69.0
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 3.7e-147 525.4 387 69.0
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 8.2e-147 524.2 432 64.4
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 8.2e-147 524.2 387 69.5
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.4e-146 523.5 389 67.1
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 2.4e-146 522.7 387 69.0
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 4.1e-146 521.9 387 69.8
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 5.3e-146 521.5 387 68.7
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 6.9e-146 521.2 388 68.0
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 4.5e-145 518.5 387 67.7
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 4.5e-145 518.5 387 67.7
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 5.9e-145 518.1 391 69.1
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 1.7e-144 516.5 395 67.1
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.7e-144 516.5 395 67.1
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 2.9e-144 515.8 393 66.9
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 6.5e-144 514.6 393 69.5
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 8.5e-144 514.2 386 67.9
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.3e-141 506.1 391 67.5
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.8e-141 504.2 385 67.3
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 1.5e-140 503.4 391 68.3
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 1.3e-139 500.4 391 67.5
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 7.7e-137 491.1 395 63.5
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 8.0e-134 481.1 386 63.0
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 6.7e-133 478.0 387 63.3
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 6.3e-131 471.5 380 65.0
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 3.5e-129 465.7 383 63.2
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 1.0e-128 464.2 403 61.3
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 8.8e-125 451.1 422 57.6
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 2.6e-124 449.5 299 76.6
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 8.3e-123 444.5 393 61.1
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 4.1e-122 442.2 383 60.6
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 9.1e-122 441.0 382 61.3
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.2e-121 440.7 383 60.6
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.6e-121 440.3 373 62.5
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 2.3e-120 436.4 386 61.7
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 3.4e-116 422.5 406 57.6
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 5.7e-116 421.8 400 59.0
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 1.8e-114 416.8 387 57.9
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 3.1e-114 416.0 398 59.5
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 5.4e-114 415.2 386 57.3
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.6e-113 413.7 269 75.8
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 3.3e-103 379.4 299 64.5
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 5.6e-103 378.6 438 50.2
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.6e-102 377.1 304 63.8
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 1.6e-97 360.5 398 51.0
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 8.1e-94 348.2 418 49.0
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 2.6e-92 343.2 387 49.9
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 6.4e-91 338.6 392 47.4
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 1.7e-83 313.9 379 46.4
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 4.6e-81 305.8 274 58.4
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 1.8e-77 293.9 414 41.3
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 9.0e-77 291.6 236 61.0
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 2.0e-68 263.8 344 49.1
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 2.4e-66 256.9 353 47.3
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 6.2e-62 242.3 248 52.8
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 7.6e-60 235.3 153 73.2
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 5.7e-47 192.6 147 70.1
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.7e-38 164.5 109 77.1
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 4.8e-38 162.9 109 76.1
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.2e-38 162.2 109 77.1
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.9e-36 156.0 109 74.3
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 2.3e-32 144.1 109 72.5
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 1.1e-31 141.7 124 61.3
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 1.2e-28 131.7 91 67.0
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 2.0e-28 131.0 97 72.2
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 1.9e-26 124.4 79 78.5
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 6.7e-24 115.9 78 70.5
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 4.8e-22 109.8 106 56.6
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 7.7e-20 102.4 59 83.1
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.0e-16 92.0 56 75.0
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 3.7e-14 83.6 328 25.3
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.8e-13 81.3 94 46.8
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 5.3e-13 79.7 80 57.5
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 5.0e-11 73.2 67 53.7
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 2.5e-10 70.9 62 59.7
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.2e-10 70.1 42 76.2


User provided reference genes

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