Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 4.6e-128 461.5 270 100.0
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 1.4e-108 396.7 273 82.1
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 6.9e-108 394.4 276 77.5
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 1.8e-95 353.2 274 71.2
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 6.5e-90 334.7 273 65.9
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.2e-88 330.5 271 66.1
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 1.0e-87 327.4 272 63.6
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 1.8e-87 326.6 273 70.7
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 1.5e-86 323.6 272 63.6
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 4.8e-85 318.5 272 62.9
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 2.4e-84 316.2 271 63.8
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 5.3e-84 315.1 267 65.2
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 6.9e-84 314.7 271 63.1
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 2.0e-83 313.2 270 66.7
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 1.7e-82 310.1 262 67.9
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 3.8e-82 308.9 274 62.4
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 6.5e-82 308.1 262 64.9
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 3.2e-81 305.8 279 60.6
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 2.1e-80 303.1 271 59.0
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 3.6e-80 302.4 262 61.8
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 6.7e-79 298.1 269 57.6
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 1.1e-78 297.4 270 62.6
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 2.0e-78 296.6 274 66.8
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 4.3e-78 295.4 269 63.6
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 1.3e-77 293.9 271 60.5
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 1.3e-77 293.9 271 66.8
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 2.2e-77 293.1 274 63.9
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 2.8e-77 292.7 273 57.9
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 8.2e-77 291.2 271 59.4
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 1.8e-76 290.0 270 59.3
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 3.1e-76 289.3 270 59.3
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 6.9e-76 288.1 274 60.2
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 5.9e-75 285.0 271 58.3
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 1.0e-74 284.3 265 59.6
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 6.5e-74 281.6 277 57.4
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 1.6e-72 276.9 265 55.8
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 7.9e-72 274.6 275 64.0
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.4e-71 273.9 223 65.5
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 1.1e-70 270.8 277 54.5
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 5.7e-70 268.5 256 62.1
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 7.4e-70 268.1 278 54.0
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 1.3e-69 267.3 274 56.6
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 2.2e-69 266.5 264 56.4
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 3.7e-69 265.8 220 68.6
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 4.8e-69 265.4 270 52.6
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 4.8e-69 265.4 284 59.5
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 6.3e-69 265.0 230 58.3
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 1.1e-68 264.2 270 52.6
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 1.4e-68 263.8 276 56.5
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 1.4e-68 263.8 185 69.2
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 1.4e-68 263.8 180 75.6
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 3.1e-68 262.7 255 61.2
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 5.3e-68 261.9 270 55.9
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 9.1e-68 261.2 269 58.4
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 9.1e-68 261.2 261 54.4
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 1.5e-67 260.4 270 60.4
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 2.6e-67 259.6 274 52.9
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 2.6e-67 259.6 279 54.1
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 4.5e-67 258.8 270 51.5
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 4.5e-67 258.8 270 52.6
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 1.0e-66 257.7 238 60.5
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 1.7e-66 256.9 275 55.6
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 2.2e-66 256.5 273 52.0
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 2.2e-66 256.5 286 52.4
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 2.9e-66 256.1 252 58.3
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 3.8e-66 255.8 286 52.4
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 6.5e-66 255.0 274 52.2
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 8.5e-66 254.6 272 58.1
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 4.2e-65 252.3 280 55.7
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 1.2e-64 250.8 271 60.1
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 1.6e-64 250.4 288 49.0
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 1.6e-64 250.4 185 66.5
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 1.6e-64 250.4 259 54.4
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 2.7e-64 249.6 259 58.7
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 3.6e-64 249.2 275 51.6
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 6.1e-64 248.4 279 51.6
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 1.4e-63 247.3 323 50.2
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 2.3e-63 246.5 261 51.0
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 3.0e-63 246.1 285 50.9
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 5.2e-63 245.4 279 51.6
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 1.1e-62 244.2 273 52.0
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 1.7e-61 240.4 286 47.6
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 2.2e-61 240.0 263 51.7
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 6.3e-61 238.4 260 55.0
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 7.0e-60 235.0 230 61.7
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 7.7e-59 231.5 239 50.6
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 3.8e-58 229.2 232 54.3
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 4.2e-57 225.7 273 54.9
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 5.5e-57 225.3 271 48.7
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 8.0e-56 221.5 274 47.4
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 1.8e-55 220.3 185 60.0
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 3.2e-49 199.5 202 62.9
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 1.0e-47 194.5 137 68.6
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 6.8e-47 191.8 193 52.3
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 1.2e-46 191.0 223 56.1
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 3.3e-41 172.9 225 42.2
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 3.3e-41 172.9 202 51.0
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 5.6e-41 172.2 217 50.7
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 9.5e-41 171.4 179 49.7
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 5.7e-38 162.2 180 45.6
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-37 158.3 179 45.8
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 2.4e-36 156.8 219 43.4
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 6.6e-34 148.7 163 55.2
Glyma.14G089100 Glycine max HOM05D007224 ORTHO05D009169 1.2e-30 137.9 92 71.7
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 3.0e-26 123.2 199 40.7
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 4.9e-21 105.9 84 64.3
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 2.7e-19 100.1 219 39.3
MCO05G240 Micromonas commoda HOM05D007224 ORTHO05D009169 3.0e-18 96.7 152 38.2
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 2.9e-13 80.1 95 45.3
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 8.4e-13 78.6 76 51.3
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 1.2e-11 74.7 42 85.7


User provided reference genes

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