Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 1.0e-134 483.4 243 100.0
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 3.1e-107 392.1 243 81.1
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 2.9e-105 385.6 240 82.1
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.9e-104 382.9 243 79.0
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 1.6e-103 379.8 237 81.4
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 6.0e-103 377.9 233 80.3
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 1.9e-101 372.9 240 77.1
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.2e-100 370.2 239 78.2
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 1.1e-99 367.1 239 77.8
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.1e-99 365.5 245 76.3
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 3.4e-98 362.1 237 78.9
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 3.8e-97 358.6 237 75.9
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.9e-96 356.3 224 79.0
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 2.7e-95 352.4 238 73.9
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 3.5e-95 352.1 237 75.9
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.7e-94 349.7 242 73.6
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 1.1e-93 347.1 238 75.6
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 4.3e-93 345.1 233 76.4
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 4.3e-93 345.1 240 73.8
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 9.6e-93 344.0 241 73.0
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 2.8e-92 342.4 224 78.6
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 2.4e-91 339.3 218 76.6
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 3.1e-91 339.0 235 72.3
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 4.0e-91 338.6 239 72.0
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 6.9e-91 337.8 236 72.5
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.2e-90 337.0 236 73.3
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 1.2e-90 337.0 243 70.8
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 2.0e-90 336.3 220 73.2
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 3.4e-90 335.5 212 76.4
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 5.8e-90 334.7 239 71.1
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.7e-89 333.2 234 73.1
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.9e-88 329.7 239 70.3
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 3.2e-88 328.9 239 72.0
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 4.2e-88 328.6 240 72.9
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 9.3e-88 327.4 239 70.7
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.2e-87 327.0 219 73.1
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.7e-87 325.9 238 69.7
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 2.7e-87 325.9 238 69.7
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 3.5e-87 325.5 239 70.7
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 6.0e-87 324.7 238 69.7
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-86 323.6 222 73.9
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-86 323.6 222 73.9
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 3.9e-86 322.0 217 73.3
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 5.1e-86 321.6 239 71.1
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 5.1e-86 321.6 222 73.4
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 6.7e-86 321.2 243 70.0
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 8.7e-86 320.9 215 73.5
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.5e-85 320.1 224 71.4
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 3.3e-85 318.9 225 71.6
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 4.3e-85 318.5 236 71.2
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 3.7e-84 315.5 219 73.1
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 3.7e-84 315.5 241 69.7
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 4.8e-84 315.1 236 70.8
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 1.4e-83 313.5 219 73.1
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 3.1e-83 312.4 235 71.1
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 4.0e-83 312.0 246 67.5
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 6.9e-83 311.2 194 78.4
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 6.9e-83 311.2 220 72.7
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.5e-82 310.1 341 52.8
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 2.0e-82 309.7 219 70.8
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 2.0e-82 309.7 238 68.1
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 5.8e-82 308.1 238 68.9
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 1.3e-81 307.0 243 67.5
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.2e-81 306.2 206 73.3
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 2.9e-81 305.8 220 69.5
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 2.9e-81 305.8 260 64.6
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 4.9e-81 305.1 219 69.4
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.4e-80 303.5 245 64.9
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 1.9e-80 303.1 229 69.9
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 5.5e-80 301.6 229 69.4
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 1.6e-79 300.1 228 69.7
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.6e-79 300.1 230 66.1
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 2.7e-79 299.3 249 65.1
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.5e-79 298.9 216 69.0
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 6.0e-79 298.1 229 68.1
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 7.9e-79 297.7 215 67.0
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.3e-78 297.0 237 65.8
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 3.0e-78 295.8 236 64.8
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 5.1e-78 295.0 220 67.3
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 2.5e-77 292.7 230 64.8
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.3e-77 292.4 221 67.4
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 5.6e-77 291.6 230 64.8
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 8.2e-76 287.7 236 65.3
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 1.1e-75 287.3 245 62.0
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.4e-75 287.0 232 64.2
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.1e-75 285.8 223 65.5
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 1.2e-74 283.9 227 67.4
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 2.0e-74 283.1 224 65.6
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.5e-74 282.0 220 66.8
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 5.8e-74 281.6 232 63.4
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 1.3e-73 280.4 225 64.9
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 3.8e-73 278.9 224 64.7
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 4.9e-73 278.5 297 54.9
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 6.5e-73 278.1 220 64.5
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 6.1e-71 271.6 215 65.6
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 1.0e-70 270.8 191 70.2
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 1.3e-70 270.4 240 62.5
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.8e-70 270.0 238 58.8
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.1e-69 267.3 215 64.2
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.5e-69 266.9 241 59.3
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 2.5e-69 266.2 218 64.2
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 2.5e-69 266.2 219 62.1
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 9.7e-69 264.2 237 59.9
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 2.8e-68 262.7 219 63.0
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 3.7e-68 262.3 239 58.2
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 4.8e-68 261.9 235 61.7
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 1.4e-67 260.4 223 61.9
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.0e-65 254.2 220 60.0
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.3e-65 253.8 239 56.9
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 2.2e-65 253.1 241 59.3
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 3.8e-65 252.3 223 58.7
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 5.0e-65 251.9 190 68.4
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 5.0e-65 251.9 187 70.6
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.9e-64 250.0 217 62.7
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.6e-63 246.9 250 56.4
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.6e-63 246.9 169 73.4
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 4.6e-63 245.4 172 73.3
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.7e-60 236.9 230 57.0
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 1.1e-56 224.2 131 82.4
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 1.1e-56 224.2 169 69.8
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 4.2e-56 222.2 174 66.7
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 9.4e-56 221.1 145 75.2
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 1.8e-54 216.9 197 55.8
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 9.7e-53 211.1 193 62.2
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.7e-52 210.3 195 61.0
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 2.8e-52 209.5 180 60.6
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 2.8e-52 209.5 180 60.6
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 2.8e-52 209.5 180 60.6
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 4.1e-51 205.7 369 38.5
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 7.0e-51 204.9 205 55.1
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 2.6e-50 203.0 240 50.4
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 6.5e-49 198.4 132 75.0
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 2.0e-45 186.8 214 50.5
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 8.2e-44 181.4 199 52.3
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 2.4e-43 179.9 174 53.4
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 6.3e-36 155.2 211 47.4
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 1.5e-24 117.5 114 55.3
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 5.2e-22 109.0 239 37.2
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 8.3e-20 101.7 93 61.3
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 4.1e-19 99.4 81 59.3
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 5.9e-18 95.5 63 71.4
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 7.8e-18 95.1 267 32.2
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.9e-17 92.8 59 71.2
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 6.6e-17 92.0 86 55.8
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.9e-16 90.5 172 39.0
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.6e-15 87.4 188 33.5
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 2.3e-14 83.6 236 31.4
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 2.0e-13 80.5 106 49.1
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 2.0e-13 80.5 164 36.6
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 3.7e-12 76.3 55 69.1
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.7e-12 76.3 111 45.9
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 7.0e-11 72.0 109 41.3
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 9.2e-11 71.6 44 79.5
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 2.3e-09 67.0 45 71.1
AagrBONN_evm.TU.Sc2ySwM_117.2582 Anthoceros agrestis HOM05D004812 ORTHO05D005721 2.3e-06 57.0 176 34.7
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 6.8e-06 55.5 64 42.2
Ca_08838_v3 Cicer arietinum L. HOM05D005011 ORTHO05D006443 6.8e-06 55.5 64 42.2
Pp3c2_9790 Physcomitrium patens HOM05D005011 ORTHO05D006443 6.8e-06 55.5 59 50.8
Lalb_Chr20g0112801 Lupinus albus HOM05D005011 ORTHO05D006443 8.9e-06 55.1 60 45.0


User provided reference genes

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