Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 6.3e-96 354.0 166 100.0
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 5.2e-74 281.2 167 78.4
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 6.8e-74 280.8 164 74.4
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.2e-73 280.0 164 75.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 1.5e-73 279.6 162 74.7
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 2.6e-73 278.9 167 73.7
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 2.2e-72 275.8 164 72.6
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 3.7e-72 275.0 162 73.5
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 4.9e-72 274.6 167 71.9
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 1.4e-71 273.1 167 72.5
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.9e-71 272.7 167 73.1
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 2.4e-71 272.3 164 72.0
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 3.2e-71 271.9 164 72.6
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 7.0e-71 270.8 167 71.9
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 7.0e-71 270.8 162 74.1
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 7.0e-71 270.8 162 74.1
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 7.0e-71 270.8 162 74.1
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.2e-71 270.4 167 73.7
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.2e-70 270.0 167 72.5
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.6e-70 269.6 167 73.1
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 2.7e-70 268.9 162 69.8
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 4.6e-70 268.1 167 73.1
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 4.6e-70 268.1 167 72.5
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 4.6e-70 268.1 164 72.6
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 6.0e-70 267.7 167 71.3
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 70.7
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 71.3
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 1.5e-68 263.1 164 71.3
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 1.5e-68 263.1 164 71.3
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 2.5e-68 262.3 167 70.7
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 2.5e-68 262.3 167 70.7
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 7.3e-68 260.8 164 70.7
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 7.3e-68 260.8 167 70.7
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.2e-67 260.0 167 68.9
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 4.7e-67 258.1 167 70.1
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 6.2e-67 257.7 164 67.1
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 8.1e-67 257.3 167 69.5
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 1.1e-66 256.9 164 68.9
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 1.4e-66 256.5 164 68.3
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 2.3e-66 255.8 164 67.1
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.3e-66 255.8 164 67.1
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 3.1e-66 255.4 164 65.9
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 5.2e-66 254.6 164 66.5
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 8.9e-66 253.8 164 66.5
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.5e-65 253.1 167 67.1
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 2.6e-65 252.3 164 67.7
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.8e-65 251.1 164 66.5
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 1.3e-64 250.0 164 65.9
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.7e-64 249.6 164 65.9
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 1.7e-64 249.6 174 65.5
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 2.2e-64 249.2 164 65.9
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 3.7e-64 248.4 164 63.4
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 8.3e-64 247.3 164 64.6
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.1e-63 246.9 165 65.5
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.1e-63 246.9 165 65.5
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 1.4e-63 246.5 164 64.6
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 3.2e-63 245.4 165 64.8
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 3.2e-63 245.4 165 65.5
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 3.2e-63 245.4 165 65.5
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 3.2e-63 245.4 167 64.7
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 7.1e-63 244.2 165 66.1
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 7.1e-63 244.2 165 64.8
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.6e-62 243.0 189 62.4
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 1.6e-62 243.0 164 64.0
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 1.6e-62 243.0 164 65.9
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 3.5e-62 241.9 165 65.5
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.5e-62 241.9 177 61.6
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 4.6e-62 241.5 167 64.7
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 6.0e-62 241.1 165 65.5
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 7.8e-62 240.7 165 63.6
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.0e-61 240.4 165 64.2
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 3.0e-61 238.8 165 64.2
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 3.9e-61 238.4 165 63.6
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 5.1e-61 238.0 164 64.0
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 5.1e-61 238.0 167 62.9
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 6.6e-61 237.7 167 64.1
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 8.6e-61 237.3 175 61.7
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 1.5e-60 236.5 164 62.8
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.9e-60 236.1 165 64.2
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 5.6e-60 234.6 167 62.9
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 5.6e-60 234.6 164 64.6
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 7.3e-60 234.2 164 63.4
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 9.6e-60 233.8 164 64.0
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 9.6e-60 233.8 164 64.0
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.2e-59 233.4 167 63.5
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.8e-59 232.3 164 61.6
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 1.8e-58 229.6 164 59.8
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 3.1e-58 228.8 168 64.3
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 4.0e-58 228.4 200 52.5
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.2e-57 226.9 159 60.4
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.2e-57 226.9 164 60.4
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.6e-57 225.7 164 59.1
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 1.7e-56 223.0 167 61.7
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.9e-56 222.2 167 57.5
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 6.4e-56 221.1 216 48.6
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 3.2e-55 218.8 132 68.9
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 3.2e-55 218.8 164 54.9
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 5.4e-55 218.0 167 61.1
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.2e-54 216.9 164 54.3
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 2.7e-54 215.7 189 54.5
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.0e-53 213.8 164 57.3
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 1.3e-53 213.4 164 62.2
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.6e-53 211.1 175 54.3
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 3.3e-52 208.8 165 54.5
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.6e-51 206.5 187 49.7
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.1e-51 206.1 164 54.9
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 9.0e-50 200.7 178 55.6
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 2.0e-49 199.5 164 54.3
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 6.4e-48 194.5 126 65.1
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.9e-47 193.0 167 57.5
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.2e-46 190.3 134 61.2
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 6.0e-46 188.0 164 55.5
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 7.8e-46 187.6 127 62.2
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 8.7e-45 184.1 131 61.1
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.9e-44 183.0 179 44.7
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.4e-42 176.0 128 60.9
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.1e-42 175.6 116 67.2
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.4e-39 166.8 164 48.2
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 1.6e-38 163.3 165 44.2
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.1e-38 162.9 150 54.0
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.7e-38 162.5 164 42.1
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 2.7e-38 162.5 164 46.3
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.3e-37 160.2 130 57.7
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.8e-37 159.8 139 54.7
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.7e-37 157.9 138 51.4
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 8.7e-37 157.5 167 47.9
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-36 156.8 131 53.4
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.6e-35 153.3 165 45.5
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.1e-35 152.9 136 50.7
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 2.8e-35 152.5 94 64.9
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 2.8e-35 152.5 94 64.9
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 8.1e-35 151.0 117 60.7
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 8.1e-35 151.0 161 45.3
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 4.5e-33 145.2 95 64.2
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 6.7e-29 131.3 166 40.4
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 1.3e-27 127.1 180 42.2
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.1e-26 124.0 166 39.8
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.1e-26 124.0 95 55.8
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 2.4e-26 122.9 127 44.9
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.6e-25 119.4 126 42.9
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.1e-23 114.0 80 60.0
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 4.2e-23 112.1 117 49.6
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 6.1e-22 108.2 112 49.1
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 1.5e-17 93.6 101 48.5
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 4.5e-17 92.0 89 44.9
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.1e-13 78.6 60 53.3
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.5e-12 76.3 57 54.4
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.5e-12 76.3 57 54.4
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.5e-12 76.3 57 54.4
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 7.4e-12 74.7 163 28.8
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.8e-11 72.0 57 52.6
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.2e-11 71.2 57 52.6
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.8e-10 70.1 57 50.9
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 1.0e-08 64.3 44 65.9
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.0e-08 64.3 61 42.6
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 1.7e-08 63.5 127 30.7
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 6.5e-08 61.6 115 27.8
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 1.4e-07 60.5 37 73.0
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 3.2e-07 59.3 84 34.5
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 3.2e-07 59.3 36 61.1
FAN15G3082 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.5e-07 58.5 60 41.7
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 2.7e-06 56.2 43 58.1
Haze_00845 Corylus avellana HOM05D021883 ORTHO05D034098 4.7e-06 55.5 168 25.0
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 7.9e-06 54.7 36 66.7


User provided reference genes

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