Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.3e-138 496.5 264 100.0
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.2e-72 277.3 261 60.5
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 2.0e-72 276.6 260 58.8
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.0e-71 274.2 260 59.2
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 3.0e-71 272.7 263 60.1
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 6.6e-71 271.6 269 62.8
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.1e-70 270.8 260 60.8
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.1e-70 270.8 269 61.7
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.5e-70 270.4 269 61.3
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.9e-70 270.0 259 58.3
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.6e-70 268.5 269 61.0
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.6e-69 265.8 269 60.6
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.0e-68 264.2 265 55.1
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 2.3e-68 263.1 260 57.3
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 4.0e-68 262.3 260 58.5
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.9e-66 256.1 260 56.5
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.4e-65 253.8 263 53.2
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 2.0e-64 250.0 264 54.5
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 6.0e-64 248.4 258 55.4
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 7.8e-64 248.1 265 57.7
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 7.8e-64 248.1 274 59.5
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.0e-63 246.1 261 54.0
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 8.6e-63 244.6 261 56.7
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.5e-62 243.8 262 51.5
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.9e-62 243.4 260 53.1
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.5e-62 243.0 258 55.0
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 4.3e-62 242.3 263 54.0
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 9.5e-62 241.1 265 58.5
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 2.8e-61 239.6 322 47.2
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.3e-60 236.5 212 61.8
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 3.1e-60 236.1 264 53.8
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.2e-59 234.2 249 56.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.2e-59 234.2 280 52.1
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.2e-59 234.2 258 56.2
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 2.6e-59 233.0 266 55.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 9.8e-59 231.1 259 51.7
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 9.8e-59 231.1 259 49.8
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.3e-58 230.7 261 58.2
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.3e-58 230.7 263 51.7
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 1.7e-58 230.3 274 54.0
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.9e-58 229.6 259 49.8
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.7e-58 229.2 270 55.9
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.9e-58 228.8 261 50.6
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 6.4e-58 228.4 259 51.4
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 8.3e-58 228.0 263 52.1
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.9e-57 226.9 265 55.8
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.9e-57 226.9 268 49.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 4.1e-57 225.7 262 54.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.2e-56 224.2 259 56.4
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.6e-56 223.8 261 52.5
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.7e-56 223.0 260 53.8
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 2.7e-56 223.0 269 50.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 3.5e-56 222.6 263 53.6
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 4.6e-56 222.2 272 54.4
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 4.6e-56 222.2 258 56.2
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 6.0e-56 221.9 258 52.3
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 7.8e-56 221.5 263 53.2
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.0e-55 221.1 254 53.9
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.7e-55 220.3 259 49.0
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 3.0e-55 219.5 260 56.2
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 6.6e-55 218.4 258 54.3
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 6.6e-55 218.4 258 54.3
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 8.6e-55 218.0 267 52.8
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 8.6e-55 218.0 194 64.4
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.1e-54 217.6 250 51.2
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.5e-54 217.2 283 52.7
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.9e-54 216.9 266 53.0
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.9e-54 216.9 259 50.6
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 3.3e-54 216.1 272 53.7
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 4.3e-54 215.7 267 50.9
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 4.3e-54 215.7 265 53.2
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 4.3e-54 215.7 267 50.9
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 5.6e-54 215.3 180 61.7
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 5.6e-54 215.3 260 55.4
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 9.5e-54 214.5 260 52.7
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.2e-53 214.2 253 52.6
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.8e-53 213.0 251 53.8
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 3.6e-53 212.6 259 49.0
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 4.7e-53 212.2 260 50.0
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 6.2e-53 211.8 253 53.4
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 8.1e-53 211.5 251 50.2
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 8.1e-53 211.5 250 52.0
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.1e-52 211.1 255 50.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.4e-52 210.7 248 54.0
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.4e-52 210.7 248 53.2
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.8e-52 210.3 265 51.3
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 3.1e-52 209.5 268 49.3
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 4.0e-52 209.1 263 51.7
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.2e-51 207.6 265 51.3
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.0e-51 206.8 250 50.8
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 2.0e-51 206.8 252 52.0
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.4e-51 205.7 250 50.8
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 3.7e-50 202.6 255 51.8
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.7e-50 202.6 232 49.1
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.9e-49 200.3 263 44.1
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 5.4e-49 198.7 249 49.4
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 7.1e-49 198.4 261 51.0
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 7.1e-49 198.4 260 49.6
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 7.1e-49 198.4 262 50.4
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 7.1e-49 198.4 263 48.3
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 9.2e-49 198.0 241 52.7
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.0e-47 194.5 286 45.1
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.3e-47 194.1 261 43.3
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 5.1e-47 192.2 253 50.2
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 6.6e-47 191.8 179 63.1
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.5e-46 190.7 256 50.4
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 4.3e-46 189.1 260 50.0
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 9.6e-46 188.0 160 60.0
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.6e-45 187.2 297 44.1
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 6.2e-45 185.3 277 48.0
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 2.4e-44 183.3 249 46.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 4.4e-43 179.1 278 43.9
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 3.8e-42 176.0 280 43.6
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.7e-40 169.9 375 36.0
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 4.6e-40 169.1 246 45.9
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.0e-39 167.9 176 51.7
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.0e-39 167.9 259 42.1
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.3e-39 166.8 249 42.2
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 3.0e-39 166.4 253 48.2
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 6.6e-39 165.2 154 57.1
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 9.6e-38 161.4 177 47.5
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 2.8e-37 159.8 264 42.8
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 6.2e-37 158.7 365 35.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 5.3e-36 155.6 265 42.6
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 2.2e-34 150.2 143 56.6
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.1e-33 147.9 135 55.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 8.7e-31 138.3 249 44.6
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 9.6e-30 134.8 152 57.2
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.4e-28 130.2 131 66.4
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-27 127.1 224 35.3
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 4.5e-27 125.9 251 41.0
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.3e-26 124.4 184 39.7
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.6e-24 117.5 128 61.7
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.9e-22 110.5 160 45.0
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 4.3e-22 109.4 254 33.9
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 3.1e-20 103.2 195 35.4
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.5e-19 100.9 207 38.2
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.7e-18 97.4 143 41.3
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 4.9e-18 95.9 67 67.2
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 2.5e-17 93.6 97 47.4
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 6.0e-16 89.0 133 42.9
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.0e-15 88.2 129 51.9
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 6.7e-15 85.5 220 38.6
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 4.3e-14 82.8 71 60.6
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.9e-10 70.1 231 33.3
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 1.3e-07 61.2 101 34.7
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.8e-07 60.8 85 49.4
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.8e-07 60.8 85 49.4
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 1.1e-06 58.2 93 44.1
arahy.Tifrunner.gnm1.ann1.FCA0JR Arachis hypogaea HOM05D004579 ORTHO05D005376 3.3e-06 56.6 97 38.1
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 7.4e-06 55.5 71 42.3


User provided reference genes

Program Settings