Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 4.1e-131 471.5 251 100.0
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 3.5e-106 388.7 242 87.2
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 5.3e-94 348.2 243 79.8
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 9.0e-94 347.4 243 80.2
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.4e-93 345.5 243 79.8
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 4.4e-93 345.1 243 79.4
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 9.9e-93 344.0 242 78.5
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 2.8e-79 299.3 243 69.1
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 3.8e-76 288.9 243 67.1
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 4.9e-76 288.5 245 64.9
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 1.4e-75 287.0 244 66.4
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 3.5e-74 282.3 244 67.6
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 2.3e-73 279.6 243 66.3
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 2.3e-73 279.6 245 66.9
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 2.5e-72 276.2 243 64.6
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 4.3e-72 275.4 293 57.7
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 4.3e-72 275.4 243 65.8
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 5.7e-72 275.0 249 63.9
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 7.4e-72 274.6 244 66.8
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 8.2e-71 271.2 243 65.8
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 9.0e-70 267.7 244 65.6
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 1.5e-69 266.9 243 66.3
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 2.0e-69 266.5 231 68.4
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 5.8e-69 265.0 246 63.4
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 2.5e-67 259.6 237 65.4
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 7.2e-67 258.1 245 63.3
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 1.2e-66 257.3 216 65.3
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 1.6e-66 256.9 248 63.7
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 2.7e-66 256.1 243 64.2
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 4.6e-66 255.4 229 64.6
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 6.1e-66 255.0 245 62.9
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 5.1e-65 251.9 197 70.1
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 8.7e-65 251.1 245 62.0
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 1.9e-64 250.0 209 68.9
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 1.9e-64 250.0 251 59.8
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 2.5e-64 249.6 243 60.5
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 2.5e-64 249.6 243 60.1
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 4.3e-64 248.8 207 67.6
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 7.4e-64 248.1 243 63.8
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 9.7e-64 247.7 216 66.2
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 1.3e-63 247.3 252 59.5
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 2.8e-63 246.1 175 77.1
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 8.2e-63 244.6 243 59.3
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 2.4e-62 243.0 258 61.2
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 2.4e-62 243.0 245 59.6
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 5.3e-62 241.9 243 60.1
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 5.3e-62 241.9 182 72.0
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 6.9e-62 241.5 244 59.8
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 6.9e-62 241.5 212 64.6
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 9.0e-62 241.1 244 59.8
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 1.5e-61 240.4 248 58.1
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 2.0e-61 240.0 244 60.2
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 5.9e-61 238.4 216 65.3
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 5.9e-61 238.4 237 59.9
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 2.9e-60 236.1 209 63.2
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 1.4e-59 233.8 173 71.7
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 1.4e-59 233.8 211 62.6
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 1.9e-59 233.4 222 62.6
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 1.9e-59 233.4 210 63.3
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 2.5e-59 233.0 209 63.2
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 2.5e-59 233.0 209 63.2
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 2.5e-59 233.0 209 63.2
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 3.2e-59 232.6 250 57.2
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 1.6e-58 230.3 232 59.1
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 6.1e-58 228.4 219 61.2
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 6.1e-58 228.4 181 70.2
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 1.0e-57 227.6 208 62.5
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 3.9e-57 225.7 241 56.8
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 8.8e-57 224.6 208 62.0
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 8.2e-55 218.0 207 59.9
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 1.4e-54 217.2 237 57.4
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 1.8e-54 216.9 173 69.4
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 3.1e-54 216.1 238 58.4
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 5.3e-54 215.3 245 55.5
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 9.1e-54 214.5 247 49.8
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 1.5e-53 213.8 247 50.2
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 2.0e-53 213.4 210 60.0
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 2.6e-53 213.0 243 54.7
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 1.0e-52 211.1 235 56.2
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 9.4e-51 204.5 199 60.8
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 1.6e-50 203.8 207 57.0
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 6.1e-50 201.8 177 65.0
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 3.0e-49 199.5 171 64.9
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 1.3e-47 194.1 229 52.8
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 1.4e-46 190.7 170 62.9
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 1.8e-46 190.3 246 48.0
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 4.1e-46 189.1 162 67.3
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 2.7e-42 176.4 135 71.9
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 1.4e-41 174.1 243 50.2
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 1.4e-41 174.1 167 59.9
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 4.4e-40 169.1 242 49.2
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 4.4e-40 169.1 166 55.4
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 7.5e-40 168.3 164 53.0
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 2.0e-37 160.2 142 55.6
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 1.4e-33 147.5 196 45.4
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 2.6e-32 143.3 373 37.3
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 1.2e-29 134.4 104 72.1
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 5.5e-27 125.6 104 68.3
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 5.5e-27 125.6 104 68.3
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 4.0e-25 119.4 150 43.3
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 1.8e-22 110.5 62 93.5
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 2.2e-15 87.0 174 36.2
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 9.2e-14 81.6 107 49.5
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 2.5e-11 73.6 167 31.7
Glyma.04G055801 Glycine max HOM05D007323 ORTHO05D009238 3.1e-09 66.6 152 36.2
TAR624G1004 Trochodendron aralioides HOM05D000386 ORTHO05D414906 1.9e-06 57.4 72 51.4


User provided reference genes

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