Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.1e-203 713.0 351 100.0
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 8.1e-117 424.5 349 67.9
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 4.4e-99 365.5 371 56.3
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.8e-98 362.5 310 62.9
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.7e-95 351.3 365 53.7
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.9e-94 350.1 325 60.0
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-94 350.1 325 60.0
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 3.3e-94 349.4 357 55.2
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.3e-94 349.4 328 56.7
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.6e-94 348.6 367 53.7
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 8.1e-93 344.7 341 58.1
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.4e-92 344.0 325 59.4
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 4.0e-92 342.4 325 59.7
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.3e-92 342.0 325 60.6
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.2e-91 340.9 341 57.8
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.5e-91 340.5 338 57.7
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 2.0e-91 340.1 341 56.9
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.8e-91 338.6 346 57.8
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.2e-89 332.8 324 58.3
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.2e-88 330.9 325 58.8
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.8e-87 327.0 322 57.1
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.3e-87 326.6 351 53.0
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.9e-87 325.9 323 56.3
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.3e-85 320.9 343 52.5
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 4.8e-85 318.9 353 52.7
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.8e-85 318.9 324 56.5
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 6.2e-85 318.5 344 54.7
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 6.2e-85 318.5 325 55.4
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.4e-84 317.4 322 56.8
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.8e-84 317.0 351 52.7
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 3.1e-84 316.2 319 55.8
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.1e-84 316.2 344 54.4
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 3.1e-84 316.2 340 54.7
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 4.0e-84 315.8 323 54.8
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 6.9e-84 315.1 330 56.1
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 6.9e-84 315.1 336 54.8
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 6.9e-84 315.1 324 55.2
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 9.0e-84 314.7 333 53.5
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.2e-83 314.3 319 56.1
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 2.6e-83 313.2 327 54.4
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 4.5e-83 312.4 319 56.7
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 5.8e-83 312.0 324 54.9
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 5.8e-83 312.0 360 51.9
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 7.6e-83 311.6 323 54.5
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.2e-82 310.1 344 50.9
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 3.8e-82 309.3 358 52.2
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.8e-82 309.3 346 50.9
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.8e-82 309.3 346 50.9
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.9e-82 308.9 342 52.3
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 4.9e-82 308.9 400 49.0
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 4.9e-82 308.9 368 48.9
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 4.9e-82 308.9 345 51.0
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 4.9e-82 308.9 357 50.7
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 4.9e-82 308.9 321 53.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 6.5e-82 308.5 320 55.0
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.1e-81 307.8 334 52.7
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.2e-81 306.2 317 55.2
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 3.2e-81 306.2 344 54.4
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 4.2e-81 305.8 345 51.3
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 5.5e-81 305.4 345 51.3
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 7.1e-81 305.1 344 50.3
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 9.3e-81 304.7 321 52.6
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 9.3e-81 304.7 339 51.0
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.2e-80 304.3 402 47.3
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.1e-80 303.5 320 55.0
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.7e-80 303.1 328 54.0
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.7e-80 303.1 350 51.7
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.7e-80 303.1 350 51.7
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 3.5e-80 302.8 339 51.9
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.5e-80 302.8 341 49.9
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 4.6e-80 302.4 343 49.6
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 6.0e-80 302.0 346 51.4
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 6.0e-80 302.0 327 53.8
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 6.0e-80 302.0 321 53.6
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 7.9e-80 301.6 339 51.6
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 7.9e-80 301.6 339 51.6
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.3e-79 300.1 343 53.1
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 5.1e-79 298.9 303 56.8
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.1e-78 297.7 384 47.9
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 3.3e-78 296.2 350 48.9
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 4.3e-78 295.8 353 49.0
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 5.7e-78 295.4 254 63.8
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 7.4e-78 295.0 288 58.7
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 9.6e-78 294.7 298 56.4
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.3e-77 294.3 258 61.2
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.3e-77 294.3 318 51.6
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.1e-77 293.5 325 51.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 2.8e-77 293.1 253 63.6
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.4e-76 290.8 338 50.6
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.8e-76 290.4 344 51.5
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 4.1e-76 289.3 350 48.9
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 6.9e-76 288.5 323 51.7
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.4e-75 286.2 259 60.2
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 7.6e-75 285.0 326 51.5
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 7.6e-75 285.0 325 50.5
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.2e-74 283.5 291 56.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 2.9e-74 283.1 355 47.3
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.1e-73 281.2 326 51.5
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 7.1e-73 278.5 307 51.5
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 9.3e-73 278.1 303 52.8
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.2e-72 277.7 303 54.8
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.0e-71 274.6 225 64.4
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 3.0e-71 273.1 326 49.1
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.5e-70 270.8 337 47.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.6e-69 267.3 235 62.1
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 6.3e-69 265.4 295 53.6
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 1.8e-68 263.8 262 55.3
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.2e-67 261.2 308 50.0
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.0e-67 260.4 315 49.8
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.7e-66 257.3 342 45.0
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.2e-66 256.9 245 58.8
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.9e-65 253.8 373 44.8
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 6.7e-63 245.4 244 57.8
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.3e-62 242.7 261 54.4
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 8.2e-61 238.4 316 44.6
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.0e-58 231.5 254 51.2
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 8.5e-58 228.4 306 46.7
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.5e-54 217.6 255 47.1
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.6e-54 216.9 260 50.0
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.8e-52 210.7 418 36.4
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 5.3e-52 209.1 292 43.8
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.2e-50 203.8 308 41.6
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.9e-50 203.4 257 44.0
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 6.5e-50 202.2 256 43.8
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.1e-49 201.4 248 47.2
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.5e-49 200.3 287 45.3
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-48 198.0 253 43.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.8e-47 194.1 159 61.6
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.6e-46 190.3 254 46.1
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.6e-43 181.0 265 45.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.8e-42 176.4 170 53.5
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 5.2e-39 166.0 212 42.5
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.5e-38 164.5 251 38.2
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 5.7e-38 162.5 255 38.0
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 5.4e-36 156.0 343 34.1
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.6e-35 154.5 263 36.5
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.2e-33 146.4 147 54.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 1.8e-31 141.0 127 63.8
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.2e-30 138.3 94 67.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.2e-30 138.3 246 38.2
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 7.7e-27 125.6 124 58.9
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.3e-26 124.8 236 35.2
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 2.3e-26 124.0 254 36.6
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 8.6e-26 122.1 269 34.2
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.5e-25 121.3 293 31.1
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 4.2e-25 119.8 253 32.4
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.5e-22 111.3 68 75.0
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.5e-22 111.3 68 75.0
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 3.4e-22 110.2 68 73.5
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 7.5e-22 109.0 126 38.9
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.8e-22 108.6 166 41.0
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.9e-21 106.3 290 29.0
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 7.0e-20 102.4 304 29.6
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 4.6e-19 99.8 122 37.7
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.3e-18 98.2 300 28.7
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.1e-17 95.1 83 61.4
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 1.0e-15 88.6 290 27.2
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 5.2e-15 86.3 299 28.4
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 2.2e-13 80.9 60 58.3
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.2e-11 75.1 206 29.1
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 2.3e-10 70.9 75 52.0


User provided reference genes

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