Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G396800 Prunus persica HOM05D006886 ORTHO05D008494 4.5e-68 261.2 134 100.0
MD08G1052100 Malus domestica HOM05D006886 ORTHO05D008494 1.0e-59 233.4 130 89.2
MD15G1043400 Malus domestica HOM05D006886 ORTHO05D008494 3.8e-59 231.5 130 87.7
RcHm_v2.0_Chr6g0299191 Rosa chinensis HOM05D006886 ORTHO05D008494 2.7e-57 225.3 124 88.7
FAN27G2382 Fragaria x ananassa HOM05D006886 ORTHO05D008494 2.6e-55 218.8 124 86.3
CiPaw.07G233000 Carya illinoinensis HOM05D006886 ORTHO05D008494 6.5e-51 204.1 130 75.4
COL.COLO4_18973 Corchorus olitorius HOM05D006886 ORTHO05D008494 1.5e-50 203.0 133 77.4
Cfa013010 Carpinus fangiana HOM05D006886 ORTHO05D008494 4.2e-50 201.4 131 75.6
Haze_21375 Corylus avellana HOM05D006886 ORTHO05D008494 7.2e-50 200.7 131 75.6
FvH4_2g41341 Fragaria vesca HOM05D006886 ORTHO05D008494 9.4e-50 200.3 115 86.1
QL02p018037 Quercus lobata HOM05D006886 ORTHO05D008494 1.6e-49 199.5 133 75.2
FAN15G0524 Fragaria x ananassa HOM05D006886 ORTHO05D008494 4.7e-49 198.0 112 86.6
CANSAT25G2371 Cannabis sativa HOM05D006886 ORTHO05D008494 6.1e-49 197.6 130 73.8
Duzib168G1824 Durio zibethinus HOM05D006886 ORTHO05D008494 8.0e-49 197.2 134 74.6
Thecc.09G013300 Theobroma cacao HOM05D006886 ORTHO05D008494 1.0e-48 196.8 133 75.2
Dinv03403 Davidia involucrata HOM05D006886 ORTHO05D008494 3.0e-48 195.3 134 71.6
Actinidia22280 Actinidia chinensis HOM05D006886 ORTHO05D008494 5.2e-48 194.5 132 71.2
Rhsim02G0217500 Rhododendron simsii HOM05D006886 ORTHO05D008494 5.2e-48 194.5 127 72.4
Duzib187G0928 Durio zibethinus HOM05D006886 ORTHO05D008494 1.5e-47 193.0 123 77.2
Gohir.A07G033700 Gossypium hirsutum HOM05D006886 ORTHO05D008494 2.6e-47 192.2 123 78.0
Gorai.001G038900 Gossypium raimondii HOM05D006886 ORTHO05D008494 5.7e-47 191.0 123 78.0
Manes.16G132100 Manihot esculenta HOM05D006886 ORTHO05D008494 5.7e-47 191.0 133 71.4
Potri.018G016300 Populus trichocarpa HOM05D006886 ORTHO05D008494 9.8e-47 190.3 130 70.0
Lsat_1_v5_gn_3_22560 Lactuca sativa HOM05D006886 ORTHO05D008494 2.2e-46 189.1 131 70.2
Nitab4.5_0000264g0070 Nicotiana tabacum HOM05D006886 ORTHO05D008494 7.0e-45 184.1 126 67.5
TPR.G38843 Trifolium pratense HOM05D006886 ORTHO05D008494 7.0e-45 184.1 126 71.4
Cpa.g.sc148.45 Carica papaya HOM05D006886 ORTHO05D008494 9.1e-45 183.7 124 70.2
Sabra18G0019800 Salix brachista HOM05D006886 ORTHO05D008494 1.6e-44 183.0 140 65.7
CSS0014970 Camellia sinensis var. sinensis HOM05D006886 ORTHO05D008494 2.7e-44 182.2 135 67.4
PGSC0003DMG400026287 Solanum tuberosum HOM05D006886 ORTHO05D008494 2.7e-44 182.2 126 66.7
Ciclev10010834m.g Citrus clementina HOM05D006886 ORTHO05D008494 3.5e-44 181.8 124 71.0
CsaV3_4G036380 Cucumis sativus L. HOM05D006886 ORTHO05D008494 3.5e-44 181.8 127 68.5
Nn2g12469 Nelumbo nucifera HOM05D006886 ORTHO05D008494 3.5e-44 181.8 132 68.2
Sopen08g002580 Solanum pennellii HOM05D006886 ORTHO05D008494 3.5e-44 181.8 126 65.9
Glyma.14G104300 Glycine max HOM05D006886 ORTHO05D008494 4.5e-44 181.4 126 68.3
Lj5g0011023 Lotus japonicus HOM05D006886 ORTHO05D008494 4.5e-44 181.4 125 70.4
TAR625G1053 Trochodendron aralioides HOM05D006886 ORTHO05D008494 4.5e-44 181.4 131 66.4
Lj7A737T48 Lonicera japonica HOM05D006886 ORTHO05D008494 5.9e-44 181.0 126 66.7
Medtr1g013640 Medicago truncatula HOM05D006886 ORTHO05D008494 5.9e-44 181.0 126 72.2
Phvul.001G042700 Phaseolus vulgaris HOM05D006886 ORTHO05D008494 7.7e-44 180.6 130 68.5
Solyc08g006630.3 Solanum lycopersicum HOM05D006886 ORTHO05D008494 1.0e-43 180.3 126 65.1
Cc08_g07710 Coffea canephora HOM05D006886 ORTHO05D008494 1.3e-43 179.9 125 68.8
Glyma.17G221700 Glycine max HOM05D006886 ORTHO05D008494 1.3e-43 179.9 130 68.5
Actinidia14002 Actinidia chinensis HOM05D006886 ORTHO05D008494 5.0e-43 177.9 133 63.9
HanXRQChr17g0536351 Helianthus annuus HOM05D006886 ORTHO05D008494 5.0e-43 177.9 133 65.4
TWI63G0132 Tripterygium wilfordii HOM05D006886 ORTHO05D008494 8.6e-43 177.2 128 64.8
ECA246G1281 Erigeron canadensis HOM05D006886 ORTHO05D008494 4.2e-42 174.9 134 64.2
Hma1.2p1_0355F.1_g133950 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 5.6e-42 174.5 128 64.1
PSO063G3428 Papaver somniferum HOM05D006886 ORTHO05D008494 7.2e-42 174.1 134 64.9
CAN.G285.18 Capsicum annuum HOM05D006886 ORTHO05D008494 9.5e-42 173.7 125 64.0
Eucgr.F04206 Eucalyptus grandis HOM05D006886 ORTHO05D008494 9.5e-42 173.7 126 65.9
Sed0006692 Sechium edule HOM05D006886 ORTHO05D008494 9.5e-42 173.7 127 63.8
THA.LOC104819952 Tarenaya hassleriana HOM05D006886 ORTHO05D008494 9.5e-42 173.7 124 65.3
Aqoxy7G03293 Aquilegia oxysepala HOM05D006886 ORTHO05D008494 1.2e-41 173.3 130 65.4
EL10Ac2g02461 Beta vulgaris HOM05D006886 ORTHO05D008494 1.2e-41 173.3 125 64.8
Atru.chr7.2575 Acer truncatum HOM05D006886 ORTHO05D008494 1.6e-41 172.9 132 64.4
PSO782G0555 Papaver somniferum HOM05D006886 ORTHO05D008494 1.6e-41 172.9 134 64.9
arahy.Tifrunner.gnm1.ann1.5WK6RP Arachis hypogaea HOM05D006886 ORTHO05D008494 2.1e-41 172.6 124 68.5
arahy.Tifrunner.gnm1.ann1.QF2P07 Arachis hypogaea HOM05D006886 ORTHO05D008494 2.1e-41 172.6 124 68.5
MSTRG.11790 Avicennia marina HOM05D006886 ORTHO05D008494 2.8e-41 172.2 126 62.7
Ca_13077_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 6.1e-41 171.0 148 60.1
ClCG05G016110 Citrullus lanatus HOM05D006886 ORTHO05D008494 8.0e-41 170.6 157 55.4
Dinv16422 Davidia involucrata HOM05D006886 ORTHO05D008494 8.0e-41 170.6 135 63.0
Ah.15g098740 Amaranthus hybridus HOM05D006886 ORTHO05D008494 1.4e-40 169.9 120 65.8
vmacro11273 Vaccinium macrocarpon HOM05D006886 ORTHO05D008494 1.8e-40 169.5 157 56.7
VMungo0647G1481 Vigna mungo HOM05D006886 ORTHO05D008494 2.3e-40 169.1 123 65.9
Oeu010292.1 Olea europaea HOM05D006886 ORTHO05D008494 3.0e-40 168.7 133 59.4
Carub.0004s0454 Capsella rubella HOM05D006886 ORTHO05D008494 4.0e-40 168.3 124 65.3
Sp4g03960 Schrenkiella parvula HOM05D006886 ORTHO05D008494 6.8e-40 167.5 124 65.3
Thhalv10000363m.g Eutrema salsugineum HOM05D006886 ORTHO05D008494 8.9e-40 167.2 124 65.3
SGA_v2.0_scaffold27G11627 Striga asiatica HOM05D006886 ORTHO05D008494 8.9e-40 167.2 125 60.8
A09p55990 Brassica napus HOM05D006886 ORTHO05D008494 1.2e-39 166.8 128 60.2
A09p56060 Brassica napus HOM05D006886 ORTHO05D008494 1.2e-39 166.8 128 60.2
BraA09t41001Z Brassica rapa HOM05D006886 ORTHO05D008494 1.2e-39 166.8 128 60.2
AT2G24970 Arabidopsis thaliana HOM05D006886 ORTHO05D008494 1.5e-39 166.4 126 62.7
Hund25607 Selenicereus undatus HOM05D006886 ORTHO05D008494 1.5e-39 166.4 125 62.4
Sc17g0004260 Simmondsia chinensis HOM05D006886 ORTHO05D008494 2.6e-39 165.6 125 62.4
AL4G16050 Arabidopsis lyrata HOM05D006886 ORTHO05D008494 3.4e-39 165.2 129 61.2
PGR042G1056 Punica granatum HOM05D006886 ORTHO05D008494 4.4e-39 164.9 122 67.2
AUR62032440 Chenopodium quinoa HOM05D006886 ORTHO05D008494 5.7e-39 164.5 147 57.8
CARHR116750 Cardamine hirsuta HOM05D006886 ORTHO05D008494 7.5e-39 164.1 128 63.3
Lalb_Chr14g0361721 Lupinus albus HOM05D006886 ORTHO05D008494 8.3e-38 160.6 122 62.3
MBI15_g26075_MAGBIO Magnolia biondii HOM05D006886 ORTHO05D008494 8.3e-38 160.6 165 53.9
AUR62024781 Chenopodium quinoa HOM05D006886 ORTHO05D008494 7.0e-37 157.5 113 66.4
Migut.A00389 Erythranthe guttata HOM05D006886 ORTHO05D008494 9.2e-37 157.1 123 61.0
CDE04G0647 Ceratophyllum demersum HOM05D006886 ORTHO05D008494 1.6e-36 156.4 120 62.5
C08p38980 Brassica napus HOM05D006886 ORTHO05D008494 7.8e-36 154.1 124 59.7
SHI21090 Sapria himalayana HOM05D006886 ORTHO05D008494 2.3e-35 152.5 111 66.7
Psat6g024960 Pisum sativum HOM05D006886 ORTHO05D008494 5.0e-35 151.4 126 57.9
ATR0580G343 Amborella trichopoda HOM05D006886 ORTHO05D008494 1.9e-34 149.4 125 59.2
BcaC07g40900 Brassica carinata HOM05D006886 ORTHO05D008494 4.3e-34 148.3 122 59.0
BolC8t51472H Brassica oleracea HOM05D006886 ORTHO05D008494 4.3e-34 148.3 122 59.0
Nitab4.5_0001362g0050 Nicotiana tabacum HOM05D006886 ORTHO05D008494 2.8e-33 145.6 97 69.1
RcHm_v2.0_Chr7g0186961 Rosa chinensis HOM05D006886 ORTHO05D008494 1.0e-32 143.7 87 80.5
Aa31sc83G60 Aethionema arabicum HOM05D006886 ORTHO05D008494 1.5e-31 139.8 111 60.4
BcaB08g35125 Brassica carinata HOM05D006886 ORTHO05D008494 1.3e-30 136.7 99 66.7
Cfa001083 Carpinus fangiana HOM05D006886 ORTHO05D008494 1.2e-28 130.2 130 53.8
Peaxi162Scf00045g01941 Petunia axillaris HOM05D006886 ORTHO05D008494 8.6e-27 124.0 125 50.4
Gohir.D07G037233 Gossypium hirsutum HOM05D006886 ORTHO05D008494 6.2e-25 117.9 71 83.1
Os01g0766400 Oryza sativa ssp. japonica HOM05D006886 ORTHO05D008494 6.2e-25 117.9 129 45.7
MELO3C032323.2 Cucumis melo HOM05D006886 ORTHO05D008494 4.0e-24 115.2 73 74.0
GSVIVG01036003001 Vitis vinifera HOM05D006886 ORTHO05D008494 5.2e-24 114.8 71 76.1
Zm00001eb192560 Zea mays HOM05D006886 ORTHO05D008494 8.9e-24 114.0 121 43.0
MD05G1059000 Malus domestica HOM05D006886 ORTHO05D008494 1.3e-22 110.2 70 80.0
Pp3c14_9080 Physcomitrium patens HOM05D006886 ORTHO05D008494 3.2e-21 105.5 102 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4138 Anthoceros agrestis HOM05D006886 ORTHO05D008494 7.1e-21 104.4 117 41.9
Hma1.2p1_0355F.1_g133940 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 9.2e-21 104.0 74 66.2
Pp3c17_11010 Physcomitrium patens HOM05D006886 ORTHO05D008494 1.2e-20 103.6 119 43.7
Cfa023326 Carpinus fangiana HOM05D006886 ORTHO05D008494 1.6e-20 103.2 87 62.1
Mapoly0034s0101 Marchantia polymorpha HOM05D006886 ORTHO05D008494 1.0e-19 100.5 120 41.7
GSVIVG01036001001 Vitis vinifera HOM05D006886 ORTHO05D008494 3.4e-15 85.5 58 72.4
Ca_06796_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 2.3e-11 72.8 62 59.7
MELO3C032324.2 Cucumis melo HOM05D006886 ORTHO05D008494 2.5e-10 69.3 54 59.3
Cre03.g201500 Chlamydomonas reinhardtii HOM05D006886 ORTHO05D008494 4.3e-10 68.6 130 29.2
Ca_13745_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 3.6e-09 65.5 57 59.6
SalBow4G1854 Salvia bowleyana HOM05D006886 ORTHO05D008494 2.4e-08 62.8 55 50.9


User provided reference genes

Program Settings