Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 0.0e+00 2798.8 1395 100.0
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 0.0e+00 2104.3 1395 76.8
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1859.7 1397 69.1
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 0.0e+00 1837.8 1402 67.2
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1820.8 1406 66.6
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1787.7 1430 64.8
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 0.0e+00 1401.3 1430 54.5
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 0.0e+00 1376.3 1404 55.3
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 0.0e+00 1374.8 1411 53.4
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 0.0e+00 1348.2 1480 52.6
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 0.0e+00 1322.4 1404 52.1
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 0.0e+00 1305.8 1416 50.8
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 0.0e+00 1302.3 1403 50.6
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 0.0e+00 1279.2 1416 50.3
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1203.0 1410 48.3
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 0.0e+00 1169.8 1405 47.7
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 0.0e+00 1165.6 1250 52.7
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 0.0e+00 1156.7 1408 48.9
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 0.0e+00 1149.0 1448 46.1
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 0.0e+00 1115.5 1406 48.2
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 0.0e+00 1098.6 1422 45.9
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 0.0e+00 1078.2 1416 46.7
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 0.0e+00 1077.4 1426 44.9
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 9.5e-312 1074.7 1409 44.9
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 1.0e-308 1063.9 1405 44.3
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 3.4e-307 1058.9 1413 44.7
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 3.1e-297 1025.8 1360 44.9
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 1.2e-293 1013.8 1435 43.9
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 2.9e-290 1002.7 1411 42.5
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 3.7e-290 1002.3 1341 45.1
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 1.0e-284 984.2 1431 42.6
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 5.6e-278 961.8 1435 41.7
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 7.8e-272 941.4 1410 42.0
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 8.6e-271 937.9 1410 41.2
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 4.0e-268 929.1 1354 41.6
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 2.0e-267 926.8 1421 39.8
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 2.2e-266 923.3 1416 41.7
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 4.1e-265 919.1 1407 41.2
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 7.1e-265 918.3 1404 40.7
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 9.2e-265 917.9 1420 42.2
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 5.6e-262 908.7 1421 41.4
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 6.6e-255 885.2 1406 38.9
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 1.8e-252 877.1 1402 37.9
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 3.1e-252 876.3 1413 39.9
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 4.0e-252 875.9 1409 38.7
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 3.2e-249 866.3 1233 43.4
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 3.5e-248 862.8 1431 39.2
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 4.8e-245 852.4 1405 39.1
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.4e-244 850.9 1419 39.9
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 1.2e-240 837.8 1408 39.3
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 1.3e-239 834.3 1410 36.7
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 7.4e-238 828.6 1388 38.1
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 5.5e-233 812.4 1416 37.4
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 4.6e-232 809.3 1420 37.9
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 3.9e-223 779.6 1412 36.5
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 8.7e-223 778.5 1161 40.0
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 7.4e-222 775.4 1425 37.8
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 1.2e-219 768.1 1403 36.3
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 6.5e-218 762.3 1418 36.9
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 8.5e-218 761.9 1398 36.5
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 1.4e-217 761.1 1407 36.2
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 4.2e-217 759.6 1219 39.2
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 3.0e-215 753.4 1403 36.4
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 2.0e-211 740.7 1405 36.1
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 2.0e-211 740.7 1406 36.1
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 1.1e-209 734.9 1410 36.0
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.5e-209 733.8 1206 38.4
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 4.2e-209 733.0 1408 36.9
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 4.2e-209 733.0 1412 36.1
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 1.8e-207 727.6 1412 36.3
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 2.3e-207 727.2 1406 36.6
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 3.3e-206 723.4 1397 36.6
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 6.1e-200 702.6 841 48.4
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 3.3e-198 696.8 1302 35.6
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 3.7e-197 693.3 1035 42.7
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 6.5e-194 682.6 1493 34.4
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 6.8e-191 672.5 985 42.2
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 2.4e-188 664.1 1533 32.5
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 1.2e-187 661.8 1242 36.6
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.5e-182 644.8 1104 37.9
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 7.5e-182 642.5 1420 33.2
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 6.0e-163 579.7 948 38.2
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 1.7e-149 535.0 1408 30.8
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.7e-144 516.9 360 73.3
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 1.5e-142 511.9 1426 30.0
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 1.5e-137 495.4 821 38.9
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 1.9e-132 478.4 1409 28.8
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.5e-121 442.2 360 65.0
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 1.1e-113 416.0 474 51.1
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.3e-113 414.1 276 75.7
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 9.0e-111 406.4 421 50.1
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 7.6e-110 403.3 415 52.3
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 2.2e-109 401.7 634 40.5
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.8e-101 374.4 261 73.2
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 3.2e-100 371.3 442 45.0
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.1e-87 329.7 383 48.3
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.2e-83 316.2 639 34.9
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.0e-82 311.6 212 74.5
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 7.5e-81 307.0 278 59.7
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.1e-76 293.1 427 43.6
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.9e-76 292.4 310 51.0
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 3.1e-71 275.0 374 44.1
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 1.9e-68 265.8 1360 23.7
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 3.4e-65 255.0 475 34.9
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 3.8e-61 241.5 686 29.4
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 1.9e-55 222.6 619 29.7
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.5e-54 218.4 674 28.0
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 4.7e-51 208.0 406 36.5
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 3.1e-50 205.3 287 43.6
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 1.4e-47 196.4 564 28.9
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 2.5e-44 185.7 523 27.9
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.7e-40 172.9 122 68.0
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 7.8e-38 164.1 206 43.2
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.0e-37 163.7 194 44.3
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 8.1e-35 154.1 168 49.4
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.5e-33 149.8 194 41.8
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 6.6e-29 134.4 582 24.7
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.1e-28 133.7 210 39.5
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 2.5e-28 132.5 270 34.8
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 9.9e-25 120.6 269 34.2
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 8.7e-21 107.5 57 84.2
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 6.2e-19 101.3 236 32.2
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 4.0e-18 98.6 303 30.0
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 4.5e-17 95.1 51 82.4
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 1.7e-16 93.2 813 21.8
AagrBONN_evm.TU.Sc2ySwM_368.213 Anthoceros agrestis HOM05D014773 ORTHO05D007236 1.6e-11 76.6 418 23.4
MBI16_g32432_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 2.4e-10 72.8 67 55.2
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 2.6e-09 69.3 77 46.8
FAN18G1201 Fragaria x ananassa HOM05D010466 ORTHO05D007236 3.4e-09 68.9 66 53.0
Solyc07g021115.1 Solanum lycopersicum HOM05D006182 ORTHO05D007236 9.3e-07 60.8 80 40.0


User provided reference genes

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